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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtttttgtgtcttaattgttgtcatctatttattgcaaccttattttgggatttctctctgataggtttttgtttttgttttgcctttgtttcagCCTGCTTTGTTATACATTGTCCCAGCCGTAATTGGGTTCTTGGCTTCTCACTGCATTTGGAACGGTGACATCAAACCG

Basic information

species Arabidopsis thaliana
transcript AT2G03120.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124960813|gb|EL035452.1|EL035452
EST:     ATTGTAGTCATGAACTGGTTTCAAGCAGCACAG                         CCTGCTTTGTTATACATTGTCCCAGCCGTAATTGGGTTCTTGGCTTCTCAC
genomic: ATTGTAGTCATGAACTGGTTTCAAGCAGCACAGgtcagttttt ... tttgtttcagCCTGCTTTGTTATACATTGTCCCAGCCGTAATTGGGTTCTTGGCTTCTCAC
EST: gi|164144250|gb|ES093593.1|ES093593
EST:     CGATTGTAGTCATGAACTGGTTTCAAGCAGCACAG                         CCTGCTTTGTTATACATTGTCCCAGCCGTAATTGGGTTCTTGGCTTCTCAC
genomic: CGATTGTAGTCATGAACTGGTTTCAAGCAGCACAGgtcagttttt ... tttgtttcagCCTGCTTTGTTATACATTGTCCCAGCCGTAATTGGGTTCTTGGCTTCTCAC
EST: gi|124739255|gb|EH830417.1|EH830417
EST:     TTGTAGTCATGAACTGGTTTCAAGCAGCACAG                         CCTGCTTTGTTATACATTGTCCCAGCCGTAATTGGGTTCTTGGCTTCTCAC
genomic: TTGTAGTCATGAACTGGTTTCAAGCAGCACAGgtcagttttt ... tttgtttcagCCTGCTTTGTTATACATTGTCCCAGCCGTAATTGGGTTCTTGGCTTCTCAC
EST: gi|164035761|gb|ES096042.1|ES096042
EST:     TTGGTGTGATCCTCACGATTGTAGTCATGAACTGGTTTCAAGCAGCACAG                         CCTGCTTTGTTATACATTGTCCCAGCCGTAATTGGG
genomic: TTGGTGTGATCCTCACGATTGTAGTCATGAACTGGTTTCAAGCAGCACAGgtcagttttt ... tttgtttcagCCTGCTTTGTTATACATTGTCCCAGCCGTAATTGGG
EST: gi|125305726|gb|EL319811.1|EL319811
EST:     TTGGTGTGATCCTCACGATTGTAGTCATGAACTGGTTTCAAGCAGCACAG                         CCTGCTTTGTTATACNTTGTCCCAGCCGTAA
genomic: TTGGTGTGATCCTCACGATTGTAGTCATGAACTGGTTTCAAGCAGCACAGgtcagttttt ... tttgtttcagCCTGCTTTGTTATACATTGTCCCAGCCGTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattttgggatttctctctgataggtttttgtttttgttttgcctttgtttcagCCTGCTTTGTTATACATTGTCCCAGCCGTAATTGGGTTCTTGGCTTCTCACTGCATTTGGAACGGTGACATCAAACCG
                ctctgat  putative branch site (score: 4)
                          tttttgtttttgtttt  putative PPT
                          tttttgtttttgtttt  TA-rich tract