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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttactacttcttgaaactgaaccatcatgagttttaagcgaatcaggctataagtacatgtttgggtttggttgcagAGAACGGGTGTGCTCATCAGAAGACGAAGGTTCTGATTCAGTTCATGCTCAATCGTCTTCAGCTTCAGTGGTGTTTACACCTCCACAGACTCCAAACACA

Basic information

species Arabidopsis thaliana
transcript AT2G01450.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125123532|gb|EL169981.1|EL169981
EST:     GAGGAACACAACTCCCCACCACATCAGAGAAAGTACACTTCACTCCCTAG                         AGAACGGGTGTG
genomic: GAGGAACACAACTCCCCACCACATCAGAGAAAGTACACTTCACTCCCTAGgtgagttact ... ttggttgcagAGAACGGGTGTG
EST: gi|125107414|gb|EL160723.1|EL160723
EST:     GAGGAACACAACTCCCCACCACATCAGAGAAAGTACACTTCACTCCCTAG                         AGAACGGGTGTGCTCATCAGAAGACG
genomic: GAGGAACACAACTCCCCACCACATCAGAGAAAGTACACTTCACTCCCTAGgtgagttact ... ttggttgcagAGAACGGGTGTGCTCATCAGAAGACG
EST: gi|124890891|gb|EH969793.1|EH969793
EST:     GAGGAACACAACTCCCCACCACATCAGAGAAAGTACACTTCACTCCCTAG                         AGAACGGGTGTGCTCATCAGAAGACGAAGGTTCTGATTCAGTTCA
genomic: GAGGAACACAACTCCCCACCACATCAGAGAAAGTACACTTCACTCCCTAGgtgagttact ... ttggttgcagAGAACGGGTGTGCTCATCAGAAGACGAAGGTTCTGATTCAGTTCA
EST: gi|125137859|gb|EL177567.1|EL177567
EST:     GAGGAACACAACTCCCCACCACATCAGAGAAAGTACACTTCACTCCCTAG                         AGAACGGGTGTGACTCATCAGAAGACGAAGGTTCTGATT
genomic: GAGGAACACAACTCCCCACCACATCAGAGAAAGTACACTTCACTCCCTAGgtgagttact ... ttggttgcagAGAACGGGTGTG-CTCATCAGAAGACGAAGGTTCTGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcatgagttttaagcgaatcaggctataagtacatgtttgggtttggttgcagAGAACGGGTGTGCTCATCAGAAGACGAAGGTTCTGATTCAGTTCATGCTCAATCGTCTTCAGCTTCAGTGGTGTTTACACCTCCACAGACTCCAAACACA
       agttttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttactacttcttgaaactgaaccatcatgagttttaagcgaatcaggctataagtacatgtttgggtttggttgcagAGAACGGGTGTGCTCATCAGAAGACGAAGGTTCTGATTCAGTTCATGCTCAATCGTCTTCAGCTTCAGTGGTGTTTACACCTCCACAGACTCCAAACACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT