1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagcaaggctctttgtatctgtgtctctaatagaaatgctatatgataatagagattgaaccagctttggatgttttacagGTTTTGCAGGCCTATAATGACCAAACCAAAGCCGGCGGCTAAAGCAGAGGCACCACAAGCCAAGGGAGGTGAGCAGGCGGATGAGGGCAAGAGTGAGCCA
species | Arabidopsis thaliana |
transcript | AT1G79920.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCGGCTCTCTTGTCAGCTGACGTAAAAAGCAAGGCAGAGGCATTGGACAEST: gi|164183404|gb|ES120766.1|ES120766
genomic: CCGGCTCTCTTGTCAGCTGACGTAAAAAGCAAGGCAGAGGCATTGGACA
EST: CCGGCTCTCTTGTCAGCTGACGTTAAAAGCAAGGCAGAGGCATTGGACAEST: gi|124751360|gb|EH841490.1|EH841490
genomic: CCGGCTCTCTTGTCAGCTGACGTAAAAAGCAAGGCAGAGGCATTGGACA
EST: AGGCATTGGACAEST: gi|124743149|gb|EH834311.1|EH834311
genomic: AGGCATTGGACA
EST: CAGAGGCATTGGACAEST: gi|164162141|gb|ES084937.1|ES084937
genomic: CAGAGGCATTGGACA
EST: CCGGCTCTCTTGTCAGCTGACGTTAAAAGCAAGGCAGAGGCATTGGACAEST: gi|125287492|gb|EL301577.1|EL301577
genomic: CCGGCTCTCTTGTCAGCTGACGTAAAAAGCAAGGCAGAGGCATTGGACA
EST: GGCATCGGACA
genomic: GGCATTGGACA
ctaatagaaatgctatatgataatagagattgaaccagctttggatgttttacagGTTTTGCAGGCCTATAATGACCAAACCAAAGCCGGCGGCTAAAGCAGAGGCACCACAAGCCAAGGGAGGTGAGCAGGCGGATGAGGGCAAGAGTGAGCCA
ctctaat putative branch site (score: 3)
tatatgataataga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaaggctctttgtatctgtgtctctaatagaaatgctatatgataatagagattgaaccagctttggatgttttacagGTTTTGCAGGCCTATAATGACCAAACCAAAGCCGGCGGCTAAAGCAGAGGCACCACAAGCCAAGGGAGGTGAGCAGGCGGATGAGGGCAAGAGTGAGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA