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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtactatagccaatgtggtttaagtgaaattttgattgtttgagttgcagattgaaataaatatgtcacctgatgttataacagGTACAACCCAATGCAAACGATCCTGGCACATACCTGGTATCATTTGACAATGGGACCGCTAGCTATCTG

Basic information

species Arabidopsis thaliana
transcript AT1G79730.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164034694|gb|ES013302.1|ES013302
EST:     ATGAAAACGAAGAAATCTCTTACACTTGGGTTCGCGAATACCTCTGGGAT                         GTACAACCCAATGCAAAC
genomic: ATGAAAACGAAGAAATCTCTTACACTTGGGTTCGCGAATACCTCTGGGATgtatgtacta ... gttataacagGTACAACCCAATGCAAAC
EST: gi|164017719|gb|ES190220.1|ES190220
EST:     ATGAAAACGAAGAAATCTCTTACACTTGGGTTCGCGAATACCTCTGGGAT                         GTACAACCCAATGCAAAC
genomic: ATGAAAACGAAGAAATCTCTTACACTTGGGTTCGCGAATACCTCTGGGATgtatgtacta ... gttataacagGTACAACCCAATGCAAAC
EST: gi|86058257|gb|DR354014.1|DR354014
EST:     ATGAAAACGAAGAAATCTCTTACACTTGGGTTCGCGAATACCTCTGGGAT                         GTACAACCCAATGCAAACGATCCTGGCACATACCTGGTATCATTTGACAAT
genomic: ATGAAAACGAAGAAATCTCTTACACTTGGGTTCGCGAATACCTCTGGGATgtatgtacta ... gttataacagGTACAACCCAATGCAAACGATCCTGGCACATACCTGGTATCATTTGACAAT
EST: gi|86058258|gb|DR354015.1|DR354015
EST:     TCTTACACTTGGGTTCGCGAATACCTCTGGGAT                         GTACAACCCAATGCAAACGATCCTGGCACATACCTGGTATCATTTGACAAT
genomic: TCTTACACTTGGGTTCGCGAATACCTCTGGGATgtatgtacta ... gttataacagGTACAACCCAATGCAAACGATCCTGGCACATACCTGGTATCATTTGACAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgattgtttgagttgcagattgaaataaatatgtcacctgatgttataacagGTACAACCCAATGCAAACGATCCTGGCACATACCTGGTATCATTTGACAATGGGACCGCTAGCTATCTG
                                      acctgat  putative branch site (score: 4)
                   agattgaaataaatat  TA-rich tract