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gtaatttaatggtggagtttgttaacgtttatttctttcatttattttcacatctgcaagctctttatttttatttttctatttgtttgatctagtgattctttgttagaaacagtatattgaagctgactttgttttttctttgacttgatacgaacagATTCCCACTGCCGAGTCCCTTGTGATTAGAGTTGTTTCATCTGTTGACAAGAAGCTGGAAGTCAAACCTCGATTTCTTGAAATTTTTCGGGAGGATAGTT
species | Arabidopsis thaliana |
transcript | AT1G79000.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGCAGGAAAGAACAGAGAGAGCCAGGGCTCAAGGAAAAAGTTATGATGAG ATTCCCACTGCCGAGTCCCTTGTGATTAGAGTTGTTTCATCTGTTGACAAGEST: gi|116428303|gb|EG470895.1|EG470895
genomic: AGCAGGAAAGAACAGAGAGAGCCAGGGCTCAAGGAAAAAGTTATGATGAGgtaatttaat ... atacgaacagATTCCCACTGCCGAGTCCCTTGTGATTAGAGTTGTTTCATCTGTTGACAAG
EST: AGCAGGAAAGAACAGAGAGAGCCAGGGCTCAAGGAAAAAGTTATGATGAG ATTCCCACTGCCGAGTCCCTTGTGATTAGAGTTGTTTCATCTGTTGACAAGEST: gi|116462330|gb|EG504922.1|EG504922
genomic: AGCAGGAAAGAACAGAGAGAGCCAGGGCTCAAGGAAAAAGTTATGATGAGgtaatttaat ... atacgaacagATTCCCACTGCCGAGTCCCTTGTGATTAGAGTTGTTTCATCTGTTGACAAG
EST: AGCAGGAAAGAACAGAGAGAGCCAGGGCTCAAGGAAAAAGTTATGATGAG ATTCCCACTGCCGAGTCCCTTGTGATTAGAGTTGTTTCATCTGTTGACAAGEST: gi|124945699|gb|EL021684.1|EL021684
genomic: AGCAGGAAAGAACAGAGAGAGCCAGGGCTCAAGGAAAAAGTTATGATGAGgtaatttaat ... atacgaacagATTCCCACTGCCGAGTCCCTTGTGATTAGAGTTGTTTCATCTGTTGACAAG
EST: AGCAGGAAAGAACAGAGAGAGCCAGGGCTCAAGGAAAAAGTTATGATGAG ATTCCCACTGCCGAGTEST: gi|116447334|gb|EG489926.1|EG489926
genomic: AGCAGGAAAGAACAGAGAGAGCCAGGGCTCAAGGAAAAAGTTATGATGAGgtaatttaat ... atacgaacagATTCCCACTGCCGAGT
EST: AGCAGGAAAGAACAGAGAGAGCCAGGGCTCAAGGAAAAAGTTATGATGAG ATTCCCACTGCCGAGTCCCTTGTGATTAGAGTTGTTTCATCTGTTGACAAGEST: gi|116414729|gb|EG457321.1|EG457321
genomic: AGCAGGAAAGAACAGAGAGAGCCAGGGCTCAAGGAAAAAGTTATGATGAGgtaatttaat ... atacgaacagATTCCCACTGCCGAGTCCCTTGTGATTAGAGTTGTTTCATCTGTTGACAAG
EST: AGCAGGAAAGAACAGAGAGAGCCAGGGCTCAAGGAAAAAGTTATGATGAG ATTCCCACTGCCGAGTCCCTTGTGATTAGAGTTGTTTCATCTGTTGACAAGEST: gi|116455249|gb|EG497841.1|EG497841
genomic: AGCAGGAAAGAACAGAGAGAGCCAGGGCTCAAGGAAAAAGTTATGATGAGgtaatttaat ... atacgaacagATTCCCACTGCCGAGTCCCTTGTGATTAGAGTTGTTTCATCTGTTGACAAG
EST: AGCAGGAAAGAACAGAGAGAGCCAGGGCTCAAGGAAAAAGTTATGATGAG ATTCCCACTGCCGAGTCCCTTGTGATTAGAGTTGTTTCATCTGTTGACAAGEST: gi|116418401|gb|EG460993.1|EG460993
genomic: AGCAGGAAAGAACAGAGAGAGCCAGGGCTCAAGGAAAAAGTTATGATGAGgtaatttaat ... atacgaacagATTCCCACTGCCGAGTCCCTTGTGATTAGAGTTGTTTCATCTGTTGACAAG
EST: AGCAGGAAAGAACAGAGAGAGCCAGGGCTCAAGGAAAAAGTTATGATGAG ATTCCCACTGCCGAGTCCCTTGTGATTAGAGTTGTTTCATCTGTTGACAAGEST: gi|116447332|gb|EG489924.1|EG489924
genomic: AGCAGGAAAGAACAGAGAGAGCCAGGGCTCAAGGAAAAAGTTATGATGAGgtaatttaat ... atacgaacagATTCCCACTGCCGAGTCCCTTGTGATTAGAGTTGTTTCATCTGTTGACAAG
EST: AGCAGGAAAGAACAGAGAGAGCCAGGGCTCAAGGAAAAAGTTATGATGAG ATTCCCACTGCCGAGTCCCTTGTGATTAGAGTTGTTTCATCTGTTGACAAG
genomic: AGCAGGAAAGAACAGAGAGAGCCAGGGCTCAAGGAAAAAGTTATGATGAGgtaatttaat ... atacgaacagATTCCCACTGCCGAGTCCCTTGTGATTAGAGTTGTTTCATCTGTTGACAAG
ttagaaacagtatattgaagctgactttgttttttctttgacttgatacgaacagATTCCCACTGCCGAGTCCCTTGTGATTAGAGTTGTTTCATCTGTTGACAAGAAGCTGGAAGTCAAACCTCGATTTCTTGAAATTTTTCGGGAGGATAGTT
tttgttttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttaatggtggagtttgttaacgtttatttctttcatttattttcacatctgcaagctctttatttttatttttctatttgtttgatctagtgattctttgttagaaacagtatattgaagctgactttgttttttctttgacttgatacgaacagATTCCCACTGCCGAGTCCCTTGTGATTAGAGTTGTTTCATCTGTTGACAAGAAGCTGGAAGTCAAACCTCGATTTCTTGAAATTTTTCGGGAGGATAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT