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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttgtcacacataaccattgattgtcttgttcctttcattctttttacaattaattctgctttttatgggctttttggttcagacttttcattagcctacactagccttgttattactgaaatttcgaacaaattctttgctatattcttctgacagcattatttatgtttgtagTCGACTCGCTGGCTGCTTTACACTGAACAAGCTCCATCTGCATGGTTCAATTTCGCCCTATGTGGGTTGGTTGGCATCATCACAGCCTATATCTTTGTCT

Basic information

species Arabidopsis thaliana
transcript AT1G78920.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G78920.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: LOC_Os02g33490.1 (Oryza sativa), 3'ss of exon 9
gtaatgttgtcacacataaccattgattgtcttgttcctttcattctttttacaattaattctgctttttatgggctttttggttcagacttttcattagcctacactagccttgttattactgaaatttcgaacaaattctttgctatattcttctgacagcattatttatgtttgtagTCGACTCGCTGGCTGCTTTACACTGAACAAGCTCCATCTGCATGGTTCAATTTCGCCCTATGTGGGTTGGTTGGCATCATCACAGCCTATATCTTTGTCT
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--------------------------------------------------------------ggttatgttggtgttgtcttgttcttccttttctgcagtaaacatcaaattctttttt-------ctctgaag------tttgttataataattggcc-----tgtgtacattttcagTCTACCCGGTGGCTCCTGTACACTGAACAAGCACCTTCTGCATGGCTCAATTTTGCCTTGTGTGGCTTGGTGGGCATCATCACAGCATATGCTTTTGTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttcgaacaaattctttgctatattcttctgacagcattatttatgtttgtagTCGACTCGCTGGCTGCTTTACACTGAACAAGCTCCATCTGCATGGTTCAATTTCGCCCTATGTGGGTTGGTTGGCATCATCACAGCCTATATCTTTGTCT
                            ttctgac  putative branch site (score: 2)
                                      attatttatgtttgta  TA-rich tract