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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtacttctgcatccttttcataaagagccttccatcaaatgtttgtcctaaaaggtttacaactttgtatgcagGCCAATTTTGCATAAGTATGCCAATGAAGATGTGTCTTTAGGGTCATGGTTTATCGGTCTTGAGGTTGAACATATTGATGACCGCAACTTCTGTTGTGGG

Basic information

species Arabidopsis thaliana
transcript AT1G77810.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G77810.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv07s0031g03090.t01 (Vitis vinifera), 3'ss of exon 9
-----------------gtacgtacttctgcatccttttcataaagagccttccatcaaa---tgtttgtcctaaaaggtttacaactttg--tatgcagGCCAATTTTGCATAAGTATGCCAATGAAGATGTGTCTTTAGGGTCATGGTTTATCGGTCTTGAGGTTGAACATATTGATGACCGCAACTTCTGTTGTGGG
                   |     ||     |    || ||    |   |   ||  |    ||||   | |  |   ||  | | ||||  ||| |||||||||| |||| || |||||||| |||||||||||  | ||  | |||||||| ||||| || ||||| || || ||||| |||||||| |||||||||
aaatgctttgaatgatcagaaaaggtttgatgtttgattgatcgttaatatcttattcagacttgttaaccttggagatttggctattttgattatccagGCCAATTCTGCACAAATATGCCAACGAAGATGTGTCACTTGGTGCCTGGTTTATTGGTCTCGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86075540|gb|DR371297.1|DR371297
EST:     CAGATCTATGCCATCTCCAAGGWTCTTGCTAATTACATATCCATCAACCA                         GCCAATTTTGCATAAGTATGCCAATGAAGATGTGTCTTTAGGGTCATGGTT
genomic: CAGATCTATGCCATCTCCAAGGATCTTGCTAATTACATATCCATCAACCAgtacgtactt ... ttgtatgcagGCCAATTTTGCATAAGTATGCCAATGAAGATGTGTCTTTAGGGTCATGGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaagagccttccatcaaatgtttgtcctaaaaggtttacaactttgtatgcagGCCAATTTTGCATAAGTATGCCAATGAAGATGTGTCTTTAGGGTCATGGTTTATCGGTCTTGAGGTTGAACATATTGATGACCGCAACTTCTGTTGTGGG
                          tcctaaa  putative branch site (score: 2)
                 aaatgttt  TA-rich tract