Sequence
atgc intronic sequence ATGC exonic sequencegtacgtacttctgcatccttttcataaagagccttccatcaaatgtttgtcctaaaaggtttacaactttgtatgcagGCCAATTTTGCATAAGTATGCCAATGAAGATGTGTCTTTAGGGTCATGGTTTATCGGTCTTGAGGTTGAACATATTGATGACCGCAACTTCTGTTGTGGG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G77810.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G77810.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv07s0031g03090.t01 (Vitis vinifera), 3'ss of exon 9
-----------------gtacgtacttctgcatccttttcataaagagccttccatcaaa---tgtttgtcctaaaaggtttacaactttg--tatgcagGCCAATTTTGCATAAGTATGCCAATGAAGATGTGTCTTTAGGGTCATGGTTTATCGGTCTTGAGGTTGAACATATTGATGACCGCAACTTCTGTTGTGGG
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aaatgctttgaatgatcagaaaaggtttgatgtttgattgatcgttaatatcttattcagacttgttaaccttggagatttggctattttgattatccagGCCAATTCTGCACAAATATGCCAACGAAGATGTGTCACTTGGTGCCTGGTTTATTGGTCTCGAAGTTGAGCACATAGATGATCGCAACTTATGTTGTGGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86075540|gb|DR371297.1|DR371297EST: CAGATCTATGCCATCTCCAAGGWTCTTGCTAATTACATATCCATCAACCA GCCAATTTTGCATAAGTATGCCAATGAAGATGTGTCTTTAGGGTCATGGTT
genomic: CAGATCTATGCCATCTCCAAGGATCTTGCTAATTACATATCCATCAACCAgtacgtactt ... ttgtatgcagGCCAATTTTGCATAAGTATGCCAATGAAGATGTGTCTTTAGGGTCATGGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataaagagccttccatcaaatgtttgtcctaaaaggtttacaactttgtatgcagGCCAATTTTGCATAAGTATGCCAATGAAGATGTGTCTTTAGGGTCATGGTTTATCGGTCTTGAGGTTGAACATATTGATGACCGCAACTTCTGTTGTGGG
tcctaaa putative branch site (score: 2)
aaatgttt TA-rich tract