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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctttgctctagtctctatatccacaatgtacactttattagtggttacataacttactgctatgattggtggcccagcatttgagaccaatctgatttatgtatgtaacagaaacttttatagcttttcgtaaatcttggtctaatctctaatgatcaatacactgttggttatatgatttgcagCTGAGTGGAGAGACAAGCTTGGTCAGTTTCGGGCCAAACGTAACTTGAGGAAATACACATGAGAGAG

Basic information

species Arabidopsis thaliana
transcript AT1G75380.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124816783|gb|EH901649.1|EH901649
EST:     TTTGAGCAAAATGATGCAAGCCGTTGATGAAGAGCGATATGATGAAGCCG                         CTGAGTAGGAGAGACAAGCTTGGTCAGTTTCGGGCCAAA
genomic: TTTGAGCAAAATGATGCAAGCCGTTGATGAAGAGCGATATGATGAAGCCGgtaagctttg ... tgatttgcagCTGAGT-GGAGAGACAAGCTTGGTCAGTTTCGGGCCAAA
EST: gi|125243510|gb|EL257595.1|EL257595
EST:     TGATGAAGAGCGATATGATGAAGCCG                         CTGAGTGGAGAGACAAGCTTGGTCAGTTTCGGGCCAAACGTAACTTGAGGA
genomic: TGATGAAGAGCGATATGATGAAGCCGgtaagctttg ... tgatttgcagCTGAGTGGAGAGACAAGCTTGGTCAGTTTCGGGCCAAACGTAACTTGAGGA
EST: gi|125261918|gb|EL276003.1|EL276003
EST:     TTTGAGCAAAATGATGCAAGCCGTTGATGAAGAGCGATATGATGAAGCCG                         CTGAGTGGAGAGACAAGCTTGGTCAGTTTCGG
genomic: TTTGAGCAAAATGATGCAAGCCGTTGATGAAGAGCGATATGATGAAGCCGgtaagctttg ... tgatttgcagCTGAGTGGAGAGACAAGCTTGGTCAGTTTCGG
EST: gi|124773205|gb|EH863334.1|EH863334
EST:     TATGATGAAGCCG                         CTGAGTGGAGAGACAAGCTTGGTCAGTTTCGGGCCAAACGTAACTTGAGGA
genomic: TATGATGAAGCCGgtaagctttg ... tgatttgcagCTGAGTGGAGAGACAAGCTTGGTCAGTTTCGGGCCAAACGTAACTTGAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatcttggtctaatctctaatgatcaatacactgttggttatatgatttgcagCTGAGTGGAGAGACAAGCTTGGTCAGTTTCGGGCCAAACGTAACTTGAGGAAATACACATGAGAGAG
                ctctaat  putative branch site (score: 3)
                                        ttatatgattt  TA-rich tract