1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gttattctggtttatatgaatatttaaaagttcttctcatatatgtcacaccttagtaacaagattttctttttgtttgcagAAAGTGGACAACTACCATTCGAGAACGAGAAAAAGACAGACTAACTCCA
species | Arabidopsis thaliana |
transcript | AT1G67320.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTCACACAATTTCGATCTCATCTATCAAAGGCCCTCATTCTAACAAACAG AAAGTGGACAACT-CCATTCGAGAACGAGAAAA-GACAGACTAACTCCEST: gi|164160095|gb|EL967698.1|EL967698
genomic: GTCACACAATTTCGATCTCATCTATCAAAGGCCCTCATTCTAACAAACAGgttattctgg ... ttgtttgcagAAAGTGGACAACTACCATTCGAGAACGAGAAAAAGACAGACTAACTCC
EST: GTCACACAATTTCGATCTCATCTATCAAAGGCCCTCATTCTAACAAACAG AAAGTGGACAACTACCATTCGAGAACGAGAAAAAGACAGACTAACTCCAATEST: gi|124984711|gb|EL057349.1|EL057349
genomic: GTCACACAATTTCGATCTCATCTATCAAAGGCCCTCATTCTAACAAACAGgttattctgg ... ttgtttgcagAAAGTGGACAACTACCATTCGAGAACGAGAAAAAGACAGACTAACTCCAAT
EST: TCTATCAAAGGCCCTCATTCTAACAAACAG AAAGTGGACAACTACCATTCGAGAACGAGAAAAAGACAGACTAACTACCAEST: gi|164232934|gb|ES129184.1|ES129184
genomic: TCTATCAAAGGCCCTCATTCTAACAAACAGgttattctgg ... ttgtttgcagAAAGTGGACAACTACCATTCGAGAACGAGAAAAAGACAGACTAACT-CCA
EST: CAAAGGCCCTCATTCTAACAAACAG AAAGTGGACAACTACCATTCGAGAACGAGAAAAAAGACAGACTAACTCCAEST: gi|164063124|gb|ES149257.1|ES149257
genomic: CAAAGGCCCTCATTCTAACAAACAGgttattctgg ... ttgtttgcagAAAGTGGACAACTACCATTCGAGAACGAG-AAAAAGACAGACTAACTCCA
EST: CAAAGGCCCTCATTCTAACAAACAG TEST: gi|164063124|gb|ES149257.1|ES149257
genomic: CAAAGGCCCTCATTCTAACAAACAGgttattctgg ... ttgtttgcag-
EST: CAAAGGCCCTCATTCTAACAAACAG TEST: gi|125119594|gb|EL167743.1|EL167743
genomic: CAAAGGCCCTCATTCTAACAAACAGgttattctgg ... ttgtttgcag-
EST: TCTATCAAAGGCCCTCATTCTAACAAACAG AAAGTGGACAACTACCATTCGAGAACGAGAAAAAGACAGACTAACTCCA
genomic: TCTATCAAAGGCCCTCATTCTAACAAACAGgttattctgg ... ttgtttgcagAAAGTGGACAACTACCATTCGAGAACGAGAAAAAGACAGACTAACTCCA
aagttcttctcatatatgtcacaccttagtaacaagattttctttttgtttgcagAAAGTGGACAACTACCATTCGAGAACGAGAAAAAGACAGACTAACTCCA
tagtaac putative branch site (score: 1)
ttttctttttgtttgc putative PPT
attttctttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattctggtttatatgaatatttaaaagttcttctcatatatgtcacaccttagtaacaagattttctttttgtttgcagAAAGTGGACAACTACCATTCGAGAACGAGAAAAAGACAGACTAACTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA