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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaacaaaggaaacaaactctcttttactatcaaacaacaaggtaacatttggtttctatgcagatcataaatgtgtacaatcagAAGTATGAGAGTGCGGGTGCATTCTGGCCAGACGTTCATGGACGTATAATATCGGCATTGATCATCTCACAAATCCTTTTGTTGGGATTAATGAGCACGA

Basic information

species Arabidopsis thaliana
transcript AT1G62320.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G62320.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv10s0116g00940.t01 (Vitis vinifera), 3'ss of exon 9
------------gtaaaaacaaaggaaacaa--------actctcttttactatcaaacaacaaggtaacatt---------tggtttct----atgcagatcataaatgtgtacaatcagAAGTATGAGAGTGCGGGTGCATTCTGGCCAGACGTTCATGGACGTATAATATCGGCATTGATCATCTCACAAATCCTTTTGTTGGGATTAATGAGCACGA
              | || || |  ||  |         |  |  ||||| | |||     | ||  ||  ||         |  ||| |    ||||||||||| ||||| ||||||||  ||||||||||||  |  ||||||||||| || |||||||| ||||| ||    ||| | |||||||||||  | |||                      
atcagaaaacccccataatcagattaattatttgctgttatgcctttttattttcagttgtctagtaaattttaccttgaggtattttttgataatgcagATCATTAATGTTTACAATCAAGAGTATGAGAGTGGTGCAGCATTCTGGCCGGATGTTCATGGGCGTATTATTGGTGCACTAATCATCTCACAGCTGCTTC---------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaacaacaaggtaacatttggtttctatgcagatcataaatgtgtacaatcagAAGTATGAGAGTGCGGGTGCATTCTGGCCAGACGTTCATGGACGTATAATATCGGCATTGATCATCTCACAAATCCTTTTGTTGGGATTAATGAGCACGA
          aggtaac  putative branch site (score: 3)
                                  atcataaat  TA-rich tract