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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttccaatgattttctaaccaaataactatctgtctattatgtacattggtgttctcttattgtgcggtgttgtatcatgtttagTATGGGGATTGAATCGGTGGTGGACAAGGAAAACACAAGATCATCTAGTGGTCTTCGAGACGCGGGTTGTCCTGCATGTGAAATGGCGGTTGTGTGGATA

Basic information

species Arabidopsis thaliana
transcript AT1G62290.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G62290.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA17G01500.1 (Glycine max), 3'ss of exon 10
---------------gtaaatttccaatgattttctaaccaaataactatct-gtctattatgtacat-tggtgttctcttattgtgcggtgttgtatca--tgtttagTATGGGGATTGAATCGGTGGTGGACAAGGAAAACACAAGATCATCTAGTGGTCTTCGAGACGCGGGTTGTCCTGCATGTGAAATGGCGGTTGTGTGGATA
                |   | | |  ||| | | |   ||  ||  ||  | || || ||| |  || |    ||  | | || |    ||||   ||     || ||| |||||||  |    || || ||  || |  | | || |||||   |||||| ||  |  || | ||||||||||||||| ||||||||||| ||||| 
gtgagtcccgaagatatttttattccttgaatctttggtcatttatttaaatagtttaatatatttatgtaaaatttccattttattatttgttccttctgcccttcagTGTGGGGATCAAGAGCGTTGTAGATGAGAATGAAAGAAAATCATTGGGTGGTCATCATGGTGCTGCTTGTCCTGCATGTGAGATGGCGGTTGTTTGGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtctattatgtacattggtgttctcttattgtgcggtgttgtatcatgtttagTATGGGGATTGAATCGGTGGTGGACAAGGAAAACACAAGATCATCTAGTGGTCTTCGAGACGCGGGTTGTCCTGCATGTGAAATGGCGGTTGTGTGGATA
     tattatgta  TA-rich tract