1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaataaccatcctccacccaaaaatctagtctaattgcaaataagtcaagtagtaatcaacaacttgttgtatgtttctttgttttaccagGAATCAAAGGATGCTCCTGCTGAATCCGAC
species | Arabidopsis thaliana |
transcript | AT1G56340.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCGGAGAAAGCAGCATTTGACGAAGCTGAGAAGAAGAGAGAGGAAGAG GAGTCAAAGGATGCTCCTGCTGAATCCGACEST: gi|116465699|gb|EG508291.1|EG508291
genomic: GCGGAGAAAGCAGCATTTGACGAAGCTGAGAAGAAGAGAGAGGAAGAGgtaataacca ... gttttaccagGAATCAAAGGATGCTCCTGCTGAATCCGAC
EST: GCGGAGAAAGCAGCATTTGACGAAGCTGAGAAGAAGAGAGAGGAAGAG GAATCAAAGGATGCTCCTGCTGAATCCGACEST: gi|116465718|gb|EG508310.1|EG508310
genomic: GCGGAGAAAGCAGCATTTGACGAAGCTGAGAAGAAGAGAGAGGAAGAGgtaataacca ... gttttaccagGAATCAAAGGATGCTCCTGCTGAATCCGAC
EST: GCGGAGAAAGCAGCATTTGACGAAGCTGAGAAGAAGAGAGAGGAAGAG GAATCAAAGGATGCTCCTGCTGAATCCGACEST: gi|116465735|gb|EG508327.1|EG508327
genomic: GCGGAGAAAGCAGCATTTGACGAAGCTGAGAAGAAGAGAGAGGAAGAGgtaataacca ... gttttaccagGAATCAAAGGATGCTCCTGCTGAATCCGAC
EST: GCGGAGAAAGCAGCATTTGACGAAGCTGATAAGAAGAGAGAGGAAGAG GAATCAAAGGATGCTCCTGCTGAATCCGACEST: gi|116482410|gb|EG525002.1|EG525002
genomic: GCGGAGAAAGCAGCATTTGACGAAGCTGAGAAGAAGAGAGAGGAAGAGgtaataacca ... gttttaccagGAATCAAAGGATGCTCCTGCTGAATCCGAC
EST: GCGGAGAAAGCAGCATTTGACGAAGCTGAGAAGAAGAGAGAGGAAGAG GAATCAAAGGATGCTCCTGCTGAATCCGACEST: gi|164121228|gb|ES188340.1|ES188340
genomic: GCGGAGAAAGCAGCATTTGACGAAGCTGAGAAGAAGAGAGAGGAAGAGgtaataacca ... gttttaccagGAATCAAAGGATGCTCCTGCTGAATCCGAC
EST: CATTTGACGAAGCTGAGAAGAAGAGAGAGGAAGAG GAATCAAAGGATGCTCCTGCTGAATCCGACEST: gi|164084037|gb|ES163914.1|ES163914
genomic: CATTTGACGAAGCTGAGAAGAAGAGAGAGGAAGAGgtaataacca ... gttttaccagGAATCAAAGGATGCTCCTGCTGAATCCGAC
EST: CTGAGAAGAAGAGAGAGGAAGAG GAATCAAAGGATGCTCCTGCTGAATCCGACGCTGAGGEST: gi|124738560|gb|EH829814.1|EH829814
genomic: CTGAGAAGAAGAGAGAGGAAGAGgtaataacca ... gttttaccagGAATCAAAGGATGCTCCTGCTGAATCCGACGCTGAGG
EST: AAGAAGAGAGAGGAAGAG GAATCAAAGGATGCTCCTGCTGAATCCGACEST: gi|164065432|gb|EL985271.1|EL985271
genomic: AAGAAGAGAGAGGAAGAGgtaataacca ... gttttaccagGAATCAAAGGATGCTCCTGCTGAATCCGAC
EST: GCGGAGAAAGCAGCATTTGACGAAGCTGAGAAAGAAGAGAGAGGAAGAG GAATCAAAGGAT
genomic: GCGGAGAAAGCAGCATTTGACGAAGCTGAGAA-GAAGAGAGAGGAAGAGgtaataacca ... gttttaccagGAATCAAAGGAT
gcaaataagtcaagtagtaatcaacaacttgttgtatgtttctttgttttaccagGAATCAAAGGATGCTCCTGCTGAATCCGAC
tttctttgttttacc CT-rich tract
tttgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataaccatcctccacccaaaaatctagtctaattgcaaataagtcaagtagtaatcaacaacttgttgtatgtttctttgttttaccagGAATCAAAGGATGCTCCTGCTGAATCCGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG