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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccgttttatctctaatcccatcttctttaggtttcgtgttttgcttcacgagtacatgaaacttatcattgttacgaatttgcagATTGGTTATCTCGATTATTGTAAGAAACGTGGTTTTACAAGCTGCTATATATGGGCATGTCCTCCACTTAAGGGTGACGATTACATTCTTTACTGTCATC

Basic information

species Arabidopsis thaliana
transcript AT1G55970.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55970.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA15G00250.1 (Glycine max), 3'ss of exon 10
----------------------------------------------------------------------gtaagccgttttatctctaatcccatcttctttaggtttcgtgttttgcttcacgagtacatgaa-acttatcattgttacgaatttgcagATTGGTTATCTCGATTATTGTAAGAAACGTGGTTTTACAAGCTGCTATATATGGGCATGTCCTCCACTTAAGGGTGACGATTACATTCTTTACTGTCATC
                                                                         || | ||  |  ||| ||    | | |||   ||   ||  | | ||  |  | ||  |||  | || || || | |     ||  ||||||| || || || ||||| |||||||||||||||||||||||||| |||||||||||||||||| | |||||||| ||||| ||| | || |||||||
gtaacctttagttctaattccttgtccttgtgttgggtggaatattatacagccttgtggaaccctttgttggagtcattcaagttctgattt-gtttccttcctgta--gttctattctatataaatagttgagtagttttcgttatgattttcttttagATTGGATACCTTGAGTATTGCAAGAAACGTGGTTTTACAAGCTGCTACATATGGGCATGTCCTCCATTAAAGGGTGAAGATTATATTTTATATTGTCATC

upper sequence: AT1G55970.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA07G00230.1 (Glycine max), 3'ss of exon 10
-------------gtaagccgttttatctctaatcccatcttctttaggtttcgtgttttgcttcacgag-tacatgaaacttatcattgttacgaatt-------tgcagATTGGTTATCTCGATTATTGTAAGAAACGTGGTTTTACAAGCTGCTATATATGGGCATGTCCTCCACTTAAGGGTGACGATTACATTCTTTACTGTCATC
              ||||   | ||   |   | ||| || |        |||  ||| ||  | || |  | | || || ||||  ||| || |||||       |  ||||||| ||||| || ||||| ||||||||||||||||||||||||||||| ||||| ||||||||| | ||||| || ||||| ||| | || || ||||
gtaaatttggacactaag--atcttgctttggagcccttccttagagatattctagttctgggttactatcttcctgtaaattatatttgatatgaattatttctttttagATTGGATATCTTGAATATTGCAAGAAACGTGGTTTTACAAGCTGCTATATCTGGGCTTGTCCTCCATTAAAGGGGGAAGATTATATTTTATATTGCCATC

upper sequence: AT1G55970.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA08G24290.1 (Glycine max), 3'ss of exon 12
----------------gtaagccgttttatctctaatccc--atcttctttaggtttcgtgttttgcttcacgagtacatgaaacttatcattg-ttacgaatttgcagATTGGTTATCTCGATTATTGTAAGAAACGTGGTTTTACAAGCTGCTATATATGGGCATGTCCTCCACTTAAGGGTGACGATTACATTCTTTACTGTCATC
                  | |  | |||  | |   |||    |  | ||   |||| | ||| |  |   |  ||| || |   ||   |    |||    |||  ||||||| || || || ||||| ||||||||||||||||||||||||||||| ||||| ||||||||| | ||||| || ||||| ||| | || || ||||
gtaaatttggacaccaagatgttgctttggcacccttccttagtgatattctagttttgggttattatcttcctgtaaattatgtttgatacaaattatttctttttagATTGGATACCTTGAATATTGCAAGAAACGTGGTTTTACAAGCTGCTATATCTGGGCCTGTCCTCCATTAAAGGGAGAAGATTATATTTTATATTGCCATC

upper sequence: AT1G55970.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv09s0054g01780.t01 (Vitis vinifera), 3'ss of exon 9
-----------------gtaagccgttt---tatctctaatcccatcttctttaggtttcgtgttttgcttcacgagtacatgaaacttatcattgttacgaatttgcagATTGGTTATCTCGATTATTGTAAGAAACGTGGTTTTACAAGCTGCTATATATGGGCATGTCCTCCACTTAAGGGTGACGATTACATTCTTTACTGTCATC
                 |  |  | |||   |||   | ||      |||||  ||||| |  | ||  |  |   |   ||     |    ||         ||| |||||||| |||||||| || |||||||| || ||||| ||||| |||||||||||||| ||||||||  | |||||||| || || ||  | || || ||||
gtgagttttagtattacgccaatcttttatttattcttgatgagcaattcttatggtttggaatctttttatattgggctattggcttatatatccgattctctttccagATTGGATATCTCGAATACTGTAAGAAGCGGGGTTTCACAAGTTGCTATATATGGGCTTGTCCTCCTTTGAAGGGTGAAGACTATATATTGTATTGCCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcgtgttttgcttcacgagtacatgaaacttatcattgttacgaatttgcagATTGGTTATCTCGATTATTGTAAGAAACGTGGTTTTACAAGCTGCTATATATGGGCATGTCCTCCACTTAAGGGTGACGATTACATTCTTTACTGTCATC
                            aaacttat  TA-rich tract