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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttcttttgtttactgtgcaacttctaaaatttttattttcttcctcaaagcagattttcatggagattacattgatataatacttgattttgcagAGGATGGTAGAGAGCTGTCAAATGAAGATGCCCCTGAAAACAATCCTCAATTTACAACTGTCTATGTAGGAAATCTCTCTCCAGAA

Basic information

species Arabidopsis thaliana
transcript AT1G54080.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164177934|gb|ES108226.1|ES108226
EST:     AAAGTGTTGTAGAACTTACTAACGGATCTTCAG                         AGGATGGTAGAGAGCTGTCAAATGAAGATGCCCCTGAAAACAATCCTCAAT
genomic: AAAGTGTTGTAGAACTTACTAACGGATCTTCAGgttttctttt ... gattttgcagAGGATGGTAGAGAGCTGTCAAATGAAGATGCCCCTGAAAACAATCCTCAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcctcaaagcagattttcatggagattacattgatataatacttgattttgcagAGGATGGTAGAGAGCTGTCAAATGAAGATGCCCCTGAAAACAATCCTCAATTTACAACTGTCTATGTAGGAAATCTCTCTCCAGAA
                              attgatataatacttg  TA-rich tract