1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtacaaattcttcttatcataatttagaaatctcatatatgacgcatgtagaggtgggctcagaatcaaatattgtgttgtgtagGTTGTAGATTCTTTATATGACTGCAAAAGTGAAGTGATTGGTCCTGGATCCTTCAGATTTAAAGCTGAAATAG
species | Arabidopsis thaliana |
transcript | AT1G51610.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CATGAGTAAAGTTCTTAAATTTTTTGAGAAATGACTCG GTTGTAGATTCTTTATATGACTGCAAAAGTGAAGTGATTGGTCCTGGATCCEST: gi|116421540|gb|EG464132.1|EG464132
genomic: CATGAGTAAAGTTCTTAAA-TTTTTGAGAAATGACTCGgtacaaattc ... tgttgtgtagGTTGTAGATTCTTTATATGACTGCAAAAGTGAAGTGATTGGTCCTGGATCC
EST: TGGATGATCAAGACATGAGTAAAGTTCTTAAATTTTTGAGAAATGACTCG GTTGTAGATTCTTTATATGACTGCAAAAGTGAAGTGATTGGTCCTGGATCCEST: gi|86088026|gb|DR383785.1|DR383785
genomic: TGGATGATCAAGACATGAGTAAAGTTCTTAAATTTTTGAGAAATGACTCGgtacaaattc ... tgttgtgtagGTTGTAGATTCTTTATATGACTGCAAAAGTGAAGTGATTGGTCCTGGATCC
EST: TGGATGATCAAGACATGAGTAAAGTTCTTAAATTTTTGAGGAATGACTCG GTTGTAGATTCTTTATATGACTGCAAAAGTGAAGTGATTGGTCCTGGATCC
genomic: TGGATGATCAAGACATGAGTAAAGTTCTTAAATTTTTGAGAAATGACTCGgtacaaattc ... tgttgtgtagGTTGTAGATTCTTTATATGACTGCAAAAGTGAAGTGATTGGTCCTGGATCC
tctcatatatgacgcatgtagaggtgggctcagaatcaaatattgtgttgtgtagGTTGTAGATTCTTTATATGACTGCAAAAGTGAAGTGATTGGTCCTGGATCCTTCAGATTTAAAGCTGAAATAG
aatcaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaaattcttcttatcataatttagaaatctcatatatgacgcatgtagaggtgggctcagaatcaaatattgtgttgtgtagGTTGTAGATTCTTTATATGACTGCAAAAGTGAAGTGATTGGTCCTGGATCCTTCAGATTTAAAGCTGAAATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA