1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtatttcatttctctgcggttatacaattgatgttatcttggtgttcataaagctgatttgttttgcctttgaatagGGATTATACAAATCCAAACCTGCCTGCAGAACAAAAAGGCCGTTCATCGCAT
species | Arabidopsis thaliana |
transcript | AT1G43190.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AACAATGATCGATCTAG GGATTATACAAATCCAAACCTGCCTGCAGAACAAAAAGGCCGTTCATCGCAEST: gi|125242652|gb|EL256737.1|EL256737
genomic: AACAATGATCGATCTAGgtatttcatt ... ctttgaatagGGATTATACAAATCCAAACCTGCCTGCAGAACAAAAAGGCCGTTCATCGCA
EST: ACAACAATGATCGATCTAG GGATTATACAAATCCAAACCTGCCTGCAGAAACAAAAAGGCCGTTCATCGCEST: gi|47829251|gb|CK118935.1|CK118935
genomic: ACAACAATGATCGATCTAGgtatttcatt ... ctttgaatagGGATTATACAAATCCAAACCTGCCTGCAGAA-CAAAAAGGCCGTTCATCGC
EST: CCTTGAGGAGCTGCAAGTAAA-TACAACAATGATCGATCTAG GGATTATACAAATCCAAACCTGCCTGCAGAACAAAAAGGCCGTTCATCGCA
genomic: CCTTGAGGAGCTGCAAGTAAATTACAACAATGATCGATCTAGgtatttcatt ... ctttgaatagGGATTATACAAATCCAAACCTGCCTGCAGAACAAAAAGGCCGTTCATCGCA
tacaattgatgttatcttggtgttcataaagctgatttgttttgcctttgaatagGGATTATACAAATCCAAACCTGCCTGCAGAACAAAAAGGCCGTTCATCGCAT
agctgat putative branch site (score: 4)
tttgttttgccttt CT-rich tract
atttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttcatttctctgcggttatacaattgatgttatcttggtgttcataaagctgatttgttttgcctttgaatagGGATTATACAAATCCAAACCTGCCTGCAGAACAAAAAGGCCGTTCATCGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG