1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaaaatttggctctagtgattgtttttataggacacttggctcgtaagctcatcaaaaatgtcaaataatggcagTGGCAATACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCACTGCAG
species | Arabidopsis thaliana |
transcript | AT1G28100.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAAGTTTTAG TGCCAATACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCAEST: gi|86079751|gb|DR375508.1|DR375508
genomic: GTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAAGTTTTAGgtaaaaattt ... ataatggcagTGGCAATACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCA
EST: GTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAAGTTTTAG TGGCAATACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCAEST: gi|86081816|gb|DR377575.1|DR377575
genomic: GTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAAGTTTTAGgtaaaaattt ... ataatggcagTGGCAATACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCA
EST: GTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAAGTTTTAG TGGCAATACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCA
genomic: GTTGGAAACTGGATGGGACCTGCAATCAAAATGGCTCTCCCAAGTTTTAGgtaaaaattt ... ataatggcagTGGCAATACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCA
tgtttttataggacacttggctcgtaagctcatcaaaaatgtcaaataatggcagTGGCAATACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCACTGCAG
aaaaatgtcaaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaatttggctctagtgattgtttttataggacacttggctcgtaagctcatcaaaaatgtcaaataatggcagTGGCAATACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCACTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG