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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtttaacttttgtgtgtatttgtctgtcttatgtatatcagaaagttaagatgatgattgaacttctattacactatctttgcagTAAATCTTTTGCGGAAACCCTCCAGAGGCTTGGGGCCAAAGCAAAAGTGATCCTTTACGAGGGGAAAACACACACGGATTTGTTTCTTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G26120.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164145505|gb|ES050351.1|ES050351
EST:     TTTATTTTATTCCATGGTACTGATGACTACTCCATCCCGTCAGATGCAAG                         TAAATCTTTTGCGGAAACCCTCCAGAGGC
genomic: TTTATTTTATTCCATGGTACTGATGACTACTCCATCCCGTCAGATGCAAGgtatggttta ... atctttgcagTAAATCTTTTGCGGAAACCCTCCAGAGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtatatcagaaagttaagatgatgattgaacttctattacactatctttgcagTAAATCTTTTGCGGAAACCCTCCAGAGGCTTGGGGCCAAAGCAAAAGTGATCCTTTACGAGGGGAAAACACACACGGATTTGTTTCTTCAG
                                           ctatcttt  CT-rich tract
           aaagttaa  TA-rich tract