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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtcttactctctgtttacttacttatgtaatgtgtcaaacataacataatcataatacgatttctgaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT

Basic information

species Arabidopsis thaliana
transcript AT1G23310.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125041789|gb|EL114058.1|EL114058
EST:     AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATAC
genomic: AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATAC
EST: gi|125222304|gb|EL236389.1|EL236389
EST:     CGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
genomic: CGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
EST: gi|124935936|gb|EL012882.1|EL012882
EST:     AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCATCA
genomic: AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCA
EST: gi|125224733|gb|EL238818.1|EL238818
EST:     AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCAT
genomic: AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCAT
EST: gi|125027015|gb|EL099284.1|EL099284
EST:     AGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
genomic: AGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
EST: gi|124942847|gb|EL019074.1|EL019074
EST:     AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAA
genomic: AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAA
EST: gi|125099309|gb|EL155162.1|EL155162
EST:     TGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
genomic: TGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
EST: gi|125026180|gb|EL098449.1|EL098449
EST:     ATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
genomic: ATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
EST: gi|124748571|gb|EH838701.1|EH838701
EST:     AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTT
genomic: AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTT
EST: gi|301502125|gb|HO207665.1|HO207665
EST:     AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTC
genomic: AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTC
EST: gi|125280980|gb|EL295065.1|EL295065
EST:     AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAAGATATACAAGGTTGCATCAATTGCCC
genomic: AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGA-GATATACAAGGTTGCATCAATTGCCC
EST: gi|86074135|gb|DR369892.1|DR369892
EST:     AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
genomic: AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
EST: gi|124883909|gb|EH962811.1|EH962811
EST:     TGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
genomic: TGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
EST: gi|125060829|gb|EL129506.1|EL129506
EST:     ACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
genomic: ACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
EST: gi|125000948|gb|EL073217.1|EL073217
EST:     AACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
genomic: AACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
EST: gi|124737084|gb|EH828486.1|EH828486
EST:     AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCAT
genomic: AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCAT
EST: gi|124979750|gb|EL052755.1|EL052755
EST:     AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCT
genomic: AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCT
EST: gi|124741575|gb|EH832737.1|EH832737
EST:     ATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
genomic: ATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
EST: gi|86074126|gb|DR369883.1|DR369883
EST:     AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
genomic: AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
EST: gi|125210753|gb|EL225707.1|EL225707
EST:     CTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
genomic: CTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
EST: gi|125295709|gb|EL309794.1|EL309794
EST:     AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCA
genomic: AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCA
EST: gi|124949002|gb|EL024679.1|EL024679
EST:     AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCATCAATTG
genomic: AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTG
EST: gi|124711423|gb|EH802825.1|EH802825
EST:     ATTGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTG
genomic: A-TGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTG
EST: gi|125280568|gb|EL294653.1|EL294653
EST:     ACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
genomic: ACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
EST: gi|125060191|gb|EL128868.1|EL128868
EST:     AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGG
genomic: AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGG
EST: gi|116482910|gb|EG525502.1|EG525502
EST:     AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
genomic: AATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
EST: gi|116375777|gb|EG418369.1|EG418369
EST:     GATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
genomic: GATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
EST: gi|86074134|gb|DR369891.1|DR369891
EST:     ATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCCTCCA-GG                         GTTGTTGAGGAGATATACAAGGTTGC
genomic: ATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCC-TCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGC
EST: gi|124917263|gb|EH991137.1|EH991137
EST:     TGTGGACAGCGAGGTGGATACTTTGAGAATAGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATA
genomic: TGTGGACAGCGAGGTGGATACTTTGAGA-T-GACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATA
EST: gi|125044099|gb|EL116368.1|EL116368
EST:     CGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGG                         GTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC
genomic: CGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGgtctgtctta ... gaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttatgtaatgtgtcaaacataacataatcataatacgatttctgaatttgcagGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTT
                aaacataacataatca  TA-rich tract