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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaccaactttatggtttttggattttcgacaaggtaagatatgttttaccaagggaaatgagtatcaaccaaacataacatttgatgtttgacttcgcagGCCAATTTTGCATAAGTATGCAAATGAAGATGTGACACTCGGGTCATGGTTTATCGGTCTTGAGGTTGAGCAAATCGATGATCGTAATTTCTGTTGTGGT

Basic information

species Arabidopsis thaliana
transcript AT1G22015.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G22015.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: EFJ20056 (Selaginella moellendorffii), 3'ss of exon 10
gtaagtgaccaactttatggtttttggattttcgacaaggtaagatatgttttaccaagggaaatgagtatcaaccaaacataacatttgatgtttgacttcgc-agGCCAATTTTGCATAAGTATGCAAATGAAGATGTGACACTCGGGTCATGGTTTATCGGTCTTGAGGTTGAGCAAATCGATGATCGTAATTTCTGTTGTGGT
                                       |||||| |   |          |  |   | ||   |  |        ||    |||| ||  || |||||||||||||| |||||||| ||||| || ||  |||||||| | ||||||||||| || || || || || ||||||||| | |   | || || || 
---------------------------------------gtaagagaaactcct-------atttttctttccttcgtattgtttccttacgatttgtctatgctagGCCAATTTTGCACAAGTATGCGAATGAGGACGTTTCACTCGGGGCTTGGTTTATCGGCCTGGATGTAGAACACATCGATGATAGAACAATGTGCTGCGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaccaagggaaatgagtatcaaccaaacataacatttgatgtttgacttcgcagGCCAATTTTGCATAAGTATGCAAATGAAGATGTGACACTCGGGTCATGGTTTATCGGTCTTGAGGTTGAGCAAATCGATGATCGTAATTTCTGTTGTGGT
                             ataacattt  TA-rich tract