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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggaaatcattcggttccctttgtgtatatttttctgattgtgggccaatagaggtctattctttagttctttctgatatcttttaccctttttgacgtttcagCTGTGGGACATAAACATGGATTCTGGTCCGGTCGCATCTTACCAGGTTCATGAACATCTGAGACCCAGG

Basic information

species Arabidopsis thaliana
transcript AT1G17720.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116478423|gb|EG521015.1|EG521015
EST:     TCTCAAAGGATGGGAGATACATACTTAGTCGCGATTACATGACGCTCAAG                         CTGTGGGACATAAACATGGATTCTGGTCCGGTCGCATCTTACCAGGTTCAT
genomic: TCTCAAAGGATGGGAGATACATACTTAGTCGCGATTACATGACGCTCAAGgttggaaatc ... gacgtttcagCTGTGGGACATAAACATGGATTCTGGTCCGGTCGCATCTTACCAGGTTCAT
EST: gi|301502468|gb|HO208008.1|HO208008
EST:     TCTCAAAGGATGGGAGATACATACTTAGTCGCGATTACATGACGCTCAAG                         CTGTGGGACATAAACATGGATTCTGGTCCGGTCGCATCTTACCAGGTTCAT
genomic: TCTCAAAGGATGGGAGATACATACTTAGTCGCGATTACATGACGCTCAAGgttggaaatc ... gacgtttcagCTGTGGGACATAAACATGGATTCTGGTCCGGTCGCATCTTACCAGGTTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagaggtctattctttagttctttctgatatcttttaccctttttgacgtttcagCTGTGGGACATAAACATGGATTCTGGTCCGGTCGCATCTTACCAGGTTCATGAACATCTGAGACCCAGG
                                         ttttgac  putative branch site (score: 3)
                              tcttttaccctttttg  CT-rich tract
                           atatctttta  TA-rich tract