1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtataggaatcaaaccatcttcctgaaacagaatccatctttgatttcacttcacttcttcaattggttgttttgacccttttttcagGCTATTGCGGTGTTGCCTTATTTGGACAGAGAGCTGTCGCCAGCTAAGTATAGATCGTTCTTCATCCCGCACATGTGGCAGGAGAAAAATGTGTTTGGCA
species | Arabidopsis thaliana |
transcript | AT1G16900.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGCTTAGCAGACCGTATCAGTATCGAGGCAGCGACTTATCTACATGGGAG GCTATTGCGGTGTTGCCTTATTTGGACAGAGA-STGTCGCCAGCTAAG--TEST: gi|86076829|gb|DR372586.1|DR372586
genomic: AGCTTAGCAGACCGTATCAGTATCGAGGCAGCGACTTATCTACATGGGAGgtataggaat ... cttttttcagGCTATTGCGGTGTTGCCTTATTTGGACAGAGAGCTGTCGCCAGCTAAGTAT
EST: AGCTTAGCAGACCGTATCAGTATCGAGGCAGCGACTTATCTACATGGGAG GCTATTGCGGTGTTGCCTTATTTGGACAGAGA-STGTCGCCAGCTAAGTATEST: gi|86078701|gb|DR374458.1|DR374458
genomic: AGCTTAGCAGACCGTATCAGTATCGAGGCAGCGACTTATCTACATGGGAGgtataggaat ... cttttttcagGCTATTGCGGTGTTGCCTTATTTGGACAGAGAGCTGTCGCCAGCTAAGTAT
EST: AGCTTAGCAGACCGTATCAGTATCGAGGCAGCGACTTATCTACATGGGAG GCTATTGCGGTGTTGCCTTATTTGGACAGAGA-STGTCGCCAGCTAAG--T
genomic: AGCTTAGCAGACCGTATCAGTATCGAGGCAGCGACTTATCTACATGGGAGgtataggaat ... cttttttcagGCTATTGCGGTGTTGCCTTATTTGGACAGAGAGCTGTCGCCAGCTAAGTAT
tccatctttgatttcacttcacttcttcaattggttgttttgacccttttttcagGCTATTGCGGTGTTGCCTTATTTGGACAGAGAGCTGTCGCCAGCTAAGTATAGATCGTTCTTCATCCCGCACATGTGGCAGGAGAAAAATGTGTTTGGCA
ttttgac putative branch site (score: 3)
ttttgacccttttttc CT-rich tract
tttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataggaatcaaaccatcttcctgaaacagaatccatctttgatttcacttcacttcttcaattggttgttttgacccttttttcagGCTATTGCGGTGTTGCCTTATTTGGACAGAGAGCTGTCGCCAGCTAAGTATAGATCGTTCTTCATCCCGCACATGTGGCAGGAGAAAAATGTGTTTGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA