1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaatactgtttacaatttgttgatatccaaagatatataaccagtatactgattttgaaaattttcttttactactcaaatttcgataatataggctcctgtcataacaatatgaaaccactcttcgtcgctgacaaaccttaaccaattacgatttccttgcagGTACACAGAAGACATGGAACTTGACGATGCCATTCACACAGCGATACTGACATTGAAAGAAGG
species | Arabidopsis thaliana |
transcript | AT1G16470.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCAGCCATGGGGAAGAACGTTTCTAATGCAAAAACCTTCCTTGAGAAAAG GTACACAGAAGACATGGAACTTGACGATGCCATTCACACAGCGATACTGACEST: gi|86030209|gb|DR325962.1|DR325962
genomic: TCAGCCATGGGGAAGAACGTTTCTAATGCAAAAACCTTCCTTGAGAAAAGgtaatactgt ... ttccttgcagGTACACAGAAGACATGGAACTTGACGATGCCATTCACACAGCGATACTGAC
EST: CAGCCATGGGGGAGAACGTTTCTAATGCAAAAACCTTCCCTTGAGNAAAG N-ACACAGAAGACATGGAACTTGACGATGCCATTCACACAGCGATACTGACEST: gi|86082335|gb|DR378094.1|DR378094
genomic: CAGCCATGGGGAAGAACGTTTCTAATGCAAAAACCTTCC-TTGAGAAAAGgtaatactgt ... ttccttgcagGTACACAGAAGACATGGAACTTGACGATGCCATTCACACAGCGATACTGAC
EST: TCAGCCATGGGGAAGAACGTTTCTAATGCAAAAACCTTCCTTGAGAAAAG GTACACAGAAGACATGGAACTTGACGATGCCATTCACACAGCGATACTGAC
genomic: TCAGCCATGGGGAAGAACGTTTCTAATGCAAAAACCTTCCTTGAGAAAAGgtaatactgt ... ttccttgcagGTACACAGAAGACATGGAACTTGACGATGCCATTCACACAGCGATACTGAC
tatgaaaccactcttcgtcgctgacaaaccttaaccaattacgatttccttgcagGTACACAGAAGACATGGAACTTGACGATGCCATTCACACAGCGATACTGACATTGAAAGAAGG
ccttaac putative branch site (score: 3)
tttccttgc putative PPT
aatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatactgtttacaatttgttgatatccaaagatatataaccagtatactgattttgaaaattttcttttactactcaaatttcgataatataggctcctgtcataacaatatgaaaccactcttcgtcgctgacaaaccttaaccaattacgatttccttgcagGTACACAGAAGACATGGAACTTGACGATGCCATTCACACAGCGATACTGACATTGAAAGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG