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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattcttaagctaccttgctattctatatgtagtgcttttaaacatgttatggataacagcttttcttgttttaatcatggtagGTATCTGGGCAGGAATGTATACAGTTCGATATTTTGATGGAAAAACATATGAGTGGGTTGGCATTAGCCGCCAGCCTAACATTATTGGCAAA

Basic information

species Arabidopsis thaliana
transcript AT1G15110.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15110.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA20G25830.2 (Glycine max), 3'ss of exon 11
-gtatgattcttaagctaccttgctattctatatgtagtgcttttaaacatg---ttatgg---------ataacagcttttcttgttttaatcatggtagGTATCTGGGCAGGAATGTATACAGTTCGATATTTTGATGGAAAAACATATGAGTGGGTTGGCATTAGCCGCCAGCCTAACATTATTGGCAAA--------
 || |  || | |   | |  |  |  |  |  |   |  |||||  |  ||   || |||          ||||| |||||  |   || || |||  ||| || |||||||||||| |||| ||| ||||||||||||| ||||||||  | ||||||||  | ||||  |||||||| || || || |||        
agtgtttttttgagtttgcactattgctgaaattaatgctcttttggatttgaaattgtggcagccgattgtaacatcttttacttggtttattatg-cagGAATTTGGGCAGGAATGCATACTGTTAGATATTTTGATGGGAAAACATACAAATGGGTTGGTCTAAGCCAGCAGCCTAATATAATAGGAAAAGTATGTTT

upper sequence: AT1G15110.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA10G41430.1 (Glycine max), 3'ss of exon 9
-gtatgattcttaagctaccttgctattctatatgtagtgct------tttaaacatgttatggataac---agcttttcttgttttaatcatggt--agGTATCTGGGCAGGAATGTATACAGTTCGATATTTTGATGGAAAAACATATGAGTGGGTTGGCATTAGCCGCCAGCCTAACATTATTGGCAAA
 || |  || |     | |  |  |  |  |  |   |  ||      ||| ||  |||||  |  ||    | | | | ||  |||  | |   |  ||| || |||||||||||| |||| ||| |||||||||| || ||||||||  | ||||||||  | ||||  ||||||||||| || || |||
agtgtttttttgtgtttgcactattgctgaaattaatgcccttttggatttgaaattgttacagccaattgtaacatcttttaatttggttaatatgcagGAATATGGGCAGGAATGCATACTGTTAGATATTTTGACGGGAAAACATACAAATGGGTTGGTCTAAGCCAGCAGCCTAACATAATAGGAAAA

upper sequence: AT1G15110.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 3'ss of exon 9
--------gtat---gattcttaagctaccttgctattcta------tatgtagtgcttttaaacatgttatggataacagcttttcttgttttaatcatggtagGTATCTGGGCAGGAATGTATACAGTTCGATATTTTGATGGAAAAACATATGAGTGGGTTGGCATTAGCCGCCAGCCTAACATTATTGGCAAA
        | ||   | |||  ||  ||  |||  | |  |      |||||||| || |  | |   |||||   |   || | |   | |||||| |||  |||||| ||||| |||||| |||| ||| ||||||||||||||| |||||| ||||||||||| || ||||| ||||| || ||||||||||||
tcatttttgcatctagtttcagaatttagtttgtgaattaagaatggtatgtagtcctgtggagccaattatgacaagttgcatat---gatttaat-atg-cagGTATTTGGGCTGGAATGCATACTGTTAGATATTTTGATGGAAGAACATACGAGTGGGTTGGTATAAGCCGGCAGCCCAATATTATTGGCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagtgcttttaaacatgttatggataacagcttttcttgttttaatcatggtagGTATCTGGGCAGGAATGTATACAGTTCGATATTTTGATGGAAAAACATATGAGTGGGTTGGCATTAGCCGCCAGCCTAACATTATTGGCAAA
                                        ttttaat  putative branch site (score: 3)
       ttttaaacatgttat  TA-rich tract