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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcactagacttaaacctgtacattataatttcactttgattcttcaatctaattcttgtttttcactgagatatttgtataatcctacatcaaaaatgatgaaagtttcaagttattttctcgaaactgttttctaacatctttctttggcagCTCCCCGCTCTGATCTGTGGAGGAATAACATTAGTAATTTCTCCACTTGTGTCTCTTATTCAAGACCAGATAATGAACCTATTGCAG

Basic information

species Arabidopsis thaliana
transcript AT1G10930.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G10930.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA08G20070.1 (Glycine max), 3'ss of exon 11
gtcactagacttaaacctgtacattataatttcactttgattcttcaatctaattcttgtttttcactgagatatttgtataatcctacatcaaaaatgatgaaagtttc----aagttattttctcgaaactgttttctaacatc---tttctttg----gcagCTCCCCGCTCTGATCTGTGGAGGAATAACATTAGTAATTTCTCCACTTGTGTCTCTTATTCAAGACCAGATAATGAACCTATTGCAG
        |  | | | |  |    |   |||    ||    | |    |   ||  |  ||| |||  |||  | |  ||||| ||  ||      |  |||  | ||     |  ||||  |   |   |    ||| ||| |    ||   |||    |||| | || ||||| ||  ||   || |||||||||||||||||||| |||||||| ||||||||||| || |||||| |||||||||||
-----gtaatatgatctttcaagagacctttttgagttatggccttctccc--tttctaatttacacatagac-tgtagataatacttaattggttttagtgattgatttgtctagattatactaatgttgcgaacttccaactttggattgtcttgccatgcagTTACCAGCTCTTATTCGTCCTGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACCTATTGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaaagtttcaagttattttctcgaaactgttttctaacatctttctttggcagCTCCCCGCTCTGATCTGTGGAGGAATAACATTAGTAATTTCTCCACTTGTGTCTCTTATTCAAGACCAGATAATGAACCTATTGCAG
                                 ttctaac  putative branch site (score: 1)
                                       catctttcttt  CT-rich tract
       tttcaagttatttt  TA-rich tract