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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttatctagttagtgattatttttcaaattttatcagagtgccagcatggctctactcattcaaattttttctcttatgcagCCTGCACAAGTTGCATCCACCCGCGCTGAACTTCACCGTCGAAGTATTGCACAAATGCGG

Basic information

species Arabidopsis thaliana
transcript AT1G09980.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060117|gb|DR355874.1|DR355874
EST:     CAAACCATAGTTCACACAAAAGAGTCTCGACTGGGTTGAAGCTGAATGAT                         CCTGCACAAGTTGCATCCACCCGCGCTGAACTTCACCGTCGAAGTATTGCA
genomic: CAAACCATAGTTCACACAAAAGAGTCTCGACTGGGTTGAAGCTGAATGATgtgagttatc ... tcttatgcagCCTGCACAAGTTGCATCCACCCGCGCTGAACTTCACCGTCGAAGTATTGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttatcagagtgccagcatggctctactcattcaaattttttctcttatgcagCCTGCACAAGTTGCATCCACCCGCGCTGAACTTCACCGTCGAAGTATTGCACAAATGCGG
                                      ttttttctcttatgc  CT-rich tract
                                   aaattttttctcttat  TA-rich tract