Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatatatcaacaactttctacagataggcttaaatgaaaatattttatttcatagaaattttaaaatagataagtaaaaaaaaaaacttttcttgtaaacgcaaacatttgtttgaaacagtggaggcataagatttatcttgaagtttatttctttacgatgcagGTTGCTCTAGTTGCACTAGCAACCAATCCCTCATACCACAAGGAGCTTTTGTCAGCGGTTAAATCTTGGCCACGTTCTGTATATTCTGCTTTGACTGTTA

Basic information

species Arabidopsis thaliana
transcript AT1G08190.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08190.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 9
gtttgtatatatcaacaactttctacagataggcttaaatgaaaatattttatttcatagaaattttaaaatagataagtaaaaaaaaaaacttttcttgtaaacgcaaacatttgtttgaaacagtggaggcataagatttat-cttgaagtttatttctttacgatgcagGTTGCTCTAGTTGCACTAGCAACCAATCCCTCATACCACAAGGAGCTTTTGTCAGCGGTTAAATCTTGGCCACGTTCTGTATATTCTGCTTTGACTGTTA
                                                                      | | || | |         |  |  |||  | |  |   |||| |   |       | ||  |     ||  |  | |||  | |  ||  ||  | | ||||||||||| || || || ||||| | ||| |||| ||||||||| || |||||| | |||||||||||||||| |    | |||||||| ||| ||||||
----------------------------------------------------------------------acaaattattgttgtctctatttaatctcttgatagttgacatatccctt--ctgattgaccctgggaatcaaggcatgagttgttgttggttttgttacagGTTGCTCTTGTAGCCCTGGCAACAAGTCCATCATTCCACAAGGATCTATTGTCAACTGTTAAATCTTGGCCACCTGTGATTTATTCTGCATTGCCTGTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86063802|gb|DR359559.1|DR359559
EST:     TCCCATATATGCCTACGGATAACCCAAGGCTTAAGGATACTGTGTATGAG                         GTTGCTCTAGTTGCACTAGCAACCAATCCCTCATACCACAAGGAGCTTTTG
genomic: TCCCATATATGCCTACGGATAACCCAAGGCTTAAGGATACTGTGTATGAGgtttgtatat ... tacgatgcagGTTGCTCTAGTTGCACTAGCAACCAATCCCTCATACCACAAGGAGCTTTTG
EST: gi|125240901|gb|EL254986.1|EL254986
EST:     AAGGCTTAAGGATACTGTGTATGAG                         GTTGCTCTAGTTGCACTAGCAACCAATCCCTCATACCACAAGGAGCTTTTG
genomic: AAGGCTTAAGGATACTGTGTATGAGgtttgtatat ... tacgatgcagGTTGCTCTAGTTGCACTAGCAACCAATCCCTCATACCACAAGGAGCTTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaaacagtggaggcataagatttatcttgaagtttatttctttacgatgcagGTTGCTCTAGTTGCACTAGCAACCAATCCCTCATACCACAAGGAGCTTTTGTCAGCGGTTAAATCTTGGCCACGTTCTGTATATTCTGCTTTGACTGTTA
                                   tttatttcttt  CT-rich tract
                                aagtttatttcttta  TA-rich tract