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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgctacttccaattgtttttcttgttacctttttcaaaattttacacagcacaaaacaaaaaaaaactcaagagaaaatgtcttatgtatgtctgcagATTTGGTTCGGTACTTGTGTCCCGGGCAATTAGGGCTGCACATTGCTTAACCTCTATCCAG

Basic information

species Arabidopsis thaliana
transcript AT1G04140.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G04140.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: LOC_Os09g12550.1 (Oryza sativa), 3'ss of exon 10
gtaagtgctacttccaattgtttttcttgttacctttttcaaaattttacacagcacaaaacaaaaaaaaactcaagagaaaatgtcttatgtatgt-------ctgcagATTTGGTTCGGTACTTGTGTCCCGGGCAATTAGGGCTGCACATTGCTTAACCTCTATCCAG
    ||     |||    || | || || |||   |||    | |||||     ||        |||   |||   ||    || | ||   | |||        || || |||||  | || ||||||||||||||||| ||||| || ||||||||||| || || |||
----gtatgttttctcgatgctattttttttattattt---gatttttatctgccagtgtctgtaaattgactagtgaagtcatttattgcttttgtgatttccttgtagGTTTGGGACAGTTCTTGTGTCCCGGGCAATAAGGGCAGCCCATTGCTTAACTTCCATTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacagcacaaaacaaaaaaaaactcaagagaaaatgtcttatgtatgtctgcagATTTGGTTCGGTACTTGTGTCCCGGGCAATTAGGGCTGCACATTGCTTAACCTCTATCCAG
       acaaaacaaaaaaaaa  TA-rich tract