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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgagttaattaccttttactaaaaataaaataaaaattcttaaaacacaacaaatgttttgtaaattgatgatctcacactcttaaaacactcgttccctttctgtaaattcttaaaacacactctttcccttttgtttggtttggtagATGTTATCTTCAAAAGACATAAATTTTGTCGGCTACACATACAAAAACTTTGAAATCGTCAACGATTATCAAGTCCCCGGTATAG

Basic information

species Arabidopsis thaliana
transcript AT1G03920.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083712|gb|DR379471.1|DR379471
EST:     GAAGATAATCAAACTCAAGCACCTTCTAGAACAGGGCCATGGAGAAAA                         ATGTTATCTTCAAAAGACATAAATTTTGTCGGCTACACATACAAAAACTTT
genomic: GAAGATAATCAAACTCAAGCACCTTCTAGAACAGGGCCATGGAGAAAAgtaagttgag ... ggtttggtagATGTTATCTTCAAAAGACATAAATTTTGTCGGCTACACATACAAAAACTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccctttctgtaaattcttaaaacacactctttcccttttgtttggtttggtagATGTTATCTTCAAAAGACATAAATTTTGTCGGCTACACATACAAAAACTTTGAAATCGTCAACGATTATCAAGTCCCCGGTATAG
                            ctctttcccttttgtt  CT-rich tract
         tgtaaattcttaaaa  TA-rich tract