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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatacacatatgccttctactaaagagagttttttgtttcttctgatatctaaaaagttctttgtatcaactttgccttatcatagGCTGCAGCTATGTTCAAGGTCATGAGAGATAGCCCACCGATACCTGAATCAATGTCACCTGAGGGTAAAGACTTCCTGAGATTATGCTTCCAGAGAAACC

Basic information

species Arabidopsis thaliana
transcript AT5G66850.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66850.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA05G10050.1 (Glycine max), 3'ss of exon 7
-------------------gtaagcatacacatatgccttctactaaagagagttttttgtttcttctgatatctaaaaagttctttgtatcaactttgccttatcatagGCTGCAGCTATGTTCAAGGTCATGAGAGATAGCCCACCGATACCTGAATCAATGTCACCTGAGGGTAAAGACTTCCTGAGATTATGCTTCCAGAGAAACC
                   ||     | | || |     | ||   |   | ||  ||| ||| ||  | |  ||||| |  | ||| |   || | |||        ||||||||||| |||| ||||| ||||  || | ||| || ||||||||| || ||||| ||||||||||||| ||  |||| |  |||||  ||||||| |
ttttttctgtttgcaacttgtggatttgc-cagagatgctgtatgcatatgggtcctttatttttta-gcttgctaaataaattttttttctaattatgc--------agGCTGCAGCTCTGTTTAAGGTTATGAAGGAGACCCCTCCTATACCTGAAACACTGTCATCTGAGGGTAAAGATTTTTTGAGGTGCTGCTTTAAGAGAAATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtttcttctgatatctaaaaagttctttgtatcaactttgccttatcatagGCTGCAGCTATGTTCAAGGTCATGAGAGATAGCCCACCGATACCTGAATCAATGTCACCTGAGGGTAAAGACTTCCTGAGATTATGCTTCCAGAGAAACC
                atctaaa  putative branch site (score: 3)
                                       ctttgcctt  putative PPT
              atatctaaaaagtt  TA-rich tract