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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaaacatatcttgcaaggagaatgattacagttgaaccatcatttctagattctgaaattatcgttctttcacattttttcagGCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAG

Basic information

species Arabidopsis thaliana
transcript AT5G66600.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116429882|gb|EG472474.1|EG472474
EST:     CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAG                         GCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
genomic: CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAGgtaacaaaca ... attttttcagGCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
EST: gi|116429885|gb|EG472477.1|EG472477
EST:     CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAG                         GCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
genomic: CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAGgtaacaaaca ... attttttcagGCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
EST: gi|116429898|gb|EG472490.1|EG472490
EST:     CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAG                         GCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
genomic: CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAGgtaacaaaca ... attttttcagGCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
EST: gi|116429875|gb|EG472467.1|EG472467
EST:     CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAG                         GCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
genomic: CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAGgtaacaaaca ... attttttcagGCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
EST: gi|116429890|gb|EG472482.1|EG472482
EST:     CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAG                         GCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
genomic: CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAGgtaacaaaca ... attttttcagGCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
EST: gi|116429897|gb|EG472489.1|EG472489
EST:     CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAG                         GCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
genomic: CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAGgtaacaaaca ... attttttcagGCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
EST: gi|116429899|gb|EG472491.1|EG472491
EST:     CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAG                         GCTGCATATAACATTGGTGGACGCACAATTAGCGCCGAAGCGATACAAAGT
genomic: CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAGgtaacaaaca ... attttttcagGCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
EST: gi|116429876|gb|EG472468.1|EG472468
EST:     CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAG                         GCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
genomic: CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAGgtaacaaaca ... attttttcagGCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
EST: gi|124828066|gb|EH912932.1|EH912932
EST:     TGTGAAGAGAGTCTTACTTCTACTCAAG                         GCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
genomic: TGTGAAGAGAGTCTTACTTCTACTCAAGgtaacaaaca ... attttttcagGCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
EST: gi|116429878|gb|EG472470.1|EG472470
EST:     CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACATCTACTCAAG                         GCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
genomic: CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAGgtaacaaaca ... attttttcagGCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
EST: gi|116429887|gb|EG472479.1|EG472479
EST:     CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAG                         GCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
genomic: CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAGgtaacaaaca ... attttttcagGCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
EST: gi|116429896|gb|EG472488.1|EG472488
EST:     CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAG                         GCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
genomic: CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAGgtaacaaaca ... attttttcagGCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
EST: gi|116429893|gb|EG472485.1|EG472485
EST:     CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAG                         GCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
genomic: CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAGgtaacaaaca ... attttttcagGCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
EST: gi|116429873|gb|EG472465.1|EG472465
EST:     CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAG                         GCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
genomic: CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAGgtaacaaaca ... attttttcagGCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
EST: gi|116429874|gb|EG472466.1|EG472466
EST:     CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAG                         GCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
genomic: CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAGgtaacaaaca ... attttttcagGCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
EST: gi|116429880|gb|EG472472.1|EG472472
EST:     CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAG                         GCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
genomic: CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAGgtaacaaaca ... attttttcagGCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
EST: gi|116429891|gb|EG472483.1|EG472483
EST:     CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAG                         GCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
genomic: CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAGgtaacaaaca ... attttttcagGCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
EST: gi|116429889|gb|EG472481.1|EG472481
EST:     CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAG                         GCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT
genomic: CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAGgtaacaaaca ... attttttcagGCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagttgaaccatcatttctagattctgaaattatcgttctttcacattttttcagGCTGCATATAACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAG
                                    ttctttcacatttttt  CT-rich tract
                         tgaaattat  TA-rich tract