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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctatcgaccgtgtcttcttcagtcttattattgttagctcaaatctaaattccttgagcttccttactttctacctttgaccttctgcaatatatgaggatttcataaacatggttcttttcttgttcagCAACGACCTAGTACCAACGGAATCCCAAGATATATAGACAGCTTACATGTCATCAGAGAAACCGCGAG

Basic information

species Arabidopsis thaliana
transcript AT5G66380.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164130403|gb|ES113549.1|ES113549
EST:     CTGCAGTTCTACTTACGTATCCATTTCAAGTTATTCGAGCACGATTACAG                         CAACGACCTAGTACCAACGGAATCCCAAGATATATAG
genomic: CTGCAGTTCTTCTTACGTATCCATTTCAAGTTATACGAGCACGATTACAGgtacctatcg ... tcttgttcagCAACGACCTAGTACCAACGGAATCCCAAGATATATAG
EST: gi|19740760|gb|AU226113.1|AU226113
EST:     CTCCAGTTCTTCTTACGTATCCATTTCAAGTTATACGAGCACGATTACAG                         CAACGACCTAGTACCAACGGAATCCCAAGATATATAGACAGCTTACATGTC
genomic: CTGCAGTTCTTCTTACGTATCCATTTCAAGTTATACGAGCACGATTACAGgtacctatcg ... tcttgttcagCAACGACCTAGTACCAACGGAATCCCAAGATATATAGACAGCTTACATGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaccttctgcaatatatgaggatttcataaacatggttcttttcttgttcagCAACGACCTAGTACCAACGGAATCCCAAGATATATAGACAGCTTACATGTCATCAGAGAAACCGCGAG
 ctttgac  putative branch site (score: 4)
                                       ttcttttcttgttc  putative PPT
                        atttcataaa  TA-rich tract