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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtagcacaaaacagtgctagagctagtactgcgttgagaggtgtttgttgacattgctgatactgtactgtgcagTCCTCTTTTGTGGGCATCATTTGTAATTTTCCTACTTCTGAATGTTAATG

Basic information

species Arabidopsis thaliana
transcript AT5G65970.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164074957|gb|ES208419.1|ES208419
EST:     TTTCAAGGTGGTAGTTGGAATAAG                         TCCTCTTTTGTGGGCATCATTTGTAA-TTTCCTACTTCTGAATGTTAATG
genomic: TTTCAAGGTGGTAGTTGGAATAAGgtacgtagca ... tactgtgcagTCCTCTTTTGTGGGCATCATTTGTAATTTTCCTACTTCTGAATGTTAATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctagtactgcgttgagaggtgtttgttgacattgctgatactgtactgtgcagTCCTCTTTTGTGGGCATCATTTGTAATTTTCCTACTTCTGAATGTTAATG
                                  tgctgat  putative branch site (score: 3)