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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtataaaccattatgtagttgcgactcttttatgcaacagttactttgatccaggagatctcatttggtccttttctcttctgctatagCTTTGATCGCCATGCCCTTGAACTACTTGAGAAAATGTTGGTACTTGACCCATCTCAG

Basic information

species Arabidopsis thaliana
transcript AT5G64960.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059280|gb|DR355037.1|DR355037
EST:     ATGAAATCATCTCGGCCCTTAAAGAGACGCGTAAGGGAGATCTACAGACA                         CTTTGATCGCCATGCCCTTGGACTACTTGAGAAAATGTTGGTACTTGACCC
genomic: ATGAAATCATCTCGGCCCTTAAAGAGACGCGTAAGGGAGATCTACAGACAgtaagtataa ... tctgctatagCTTTGATCGCCATGCCCTTGAACTACTTGAGAAAATGTTGGTACTTGACCC
EST: gi|86059279|gb|DR355036.1|DR355036
EST:     ATGAAATCATCTCGGCCCTTTAAGAGACGCGTAAGGGAGATCTACAGACA                         CTTTGATCGCCATGCCCTTGAACTACTTGAGAAAA
genomic: ATGAAATCATCTCGGCCCTTAAAGAGACGCGTAAGGGAGATCTACAGACAgtaagtataa ... tctgctatagCTTTGATCGCCATGCCCTTGAACTACTTGAGAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caacagttactttgatccaggagatctcatttggtccttttctcttctgctatagCTTTGATCGCCATGCCCTTGAACTACTTGAGAAAATGTTGGTACTTGACCCATCTCAG
         ctttgat  putative branch site (score: 5)
                        tctcatttggtccttt  putative PPT
      ttacttt  TA-rich tract