Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattctctttatcttgataaaaatttgggttttcactactcttcccctcgttcccatctgaaacagattctcaatccctatgtttatattctgttgcagGATGCTTCTAAAACAGATTGTTACAATGGAGGTGATTCAGTGGACATCTCTCTGGAATAAATACAAGGACGAGTTTGAGAATGAGAAAAACATGATTGGA

Basic information

species Arabidopsis thaliana
transcript AT5G64760.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G64760.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA04G39520.1 (Glycine max), 3'ss of exon 8
gtaattctctttatcttgataaaaatttgggttttcactactcttcccctcgttcccatctgaaacagattctcaatccctatgtttatattctgttgcagGATGCTTCTAAAACAGATTGTTACAATGGAGGTGATTCAGTGGACATCTCTCTGGAATAAATACAAGGACGAGTTTGAGAATGAGAAAAACATGATTGGA
|||  |||   ||   |  | ||  |  | || ||      | ||    |  | |    ||    |  |||      |||| |  || |||  ||    ||| | ||  | |||||| | || || |||||||| || ||||||||| |||| ||| ||  ||||||||| || |||||||||||||  ||| |       
gtacgtcttcctaatct--tgaagttgcgtgtcttgttagatgttttagttatgctttcctt---ctcatttgatgcccctgttatt-tatcatgccatagGTTACTGTTGAAACAGTTGGTCACTATGGAGGTTATCCAGTGGACAACTCTTTGGGATTCATACAAGGATGAATTTGAGAATGAGAGTAACTTAGGAAAG

upper sequence: AT5G64760.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA06G15330.1 (Glycine max), 3'ss of exon 8
gtaattctctttatcttgataaaaatttgggttttcactactcttcccctcgttcccatctgaaacagattctcaatccctatgtt-tatattctgttgcagGATGCTTCTAAAACAGATTGTTACAATGGAGGTGATTCAGTGGACATCTCTCTGGAATAAATACAAGGACGAGTTTGAGAATGAGAAAAACATGATTGGA
|||  |||   ||   |  |  |  |  |  | ||      | ||    |  |||    ||    |  |||    || |  ||| | |||||  ||  | ||| | ||  | |||||| | || || |||||||| || ||||||||| |||| ||| ||  ||||||||| |||||||||||| |||  ||| |       
gtatgtcttcctaatct--tggagttgcgcatcttgctagatgttttagttattcttccctt---ctcattt--gatgcacatgctatatatcatgccgtagGTTACTGTTGAAACAGTTGGTCACTATGGAGGTTATCCAGTGGACAACTCTTTGGGATTCATACAAGGATGAGTTTGAGAATCAGAGTAACTTAGGAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctcgttcccatctgaaacagattctcaatccctatgtttatattctgttgcagGATGCTTCTAAAACAGATTGTTACAATGGAGGTGATTCAGTGGACATCTCTCTGGAATAAATACAAGGACGAGTTTGAGAATGAGAAAAACATGATTGGA
                                            ttctgtt  CT-rich tract
                                  tatgtttatattct  TA-rich tract