Sequence
atgc intronic sequence ATGC exonic sequencegtaaatgatatactttttaaagctctaaaccttcttctttgtaaattacgtcttgccatttattgaaatggttcctgactcttgatttcatctacaaaacttttgttgaagATACGAGTCTCTGGGGTTCTATCAAATGCTCCTTACCTTCTGAATGTCGATTGTGATCACTACATCAACAATAGCAAAGCTCTTAGAGAAGCAATGTGTT
Basic information
species | Arabidopsis thaliana |
transcript | AT5G64740.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G64740.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA05G32100.1 (Glycine max), 3'ss of exon 9
gtaaatgatatactttttaaagctctaaaccttcttctttgtaaattacgtcttgccatttattgaaatggttcctgactcttgatttcatctacaaaactt--ttgttgaagATACGAGTCTCTGGGGTTCTATCAAATGCTCCTTACCTTCTGAATGTCGATTGTGATCACTACATCAACAATAGCAAAGCTCTTAGAGAAGCAATGTGTT
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------------------gtaagtatcaattcacttttattttggttcagcttcagatgatgttccattgaccttaaataacttgtttttgtaatgatattaaatatgtgaagGTGCGGGCATCAGCAATTATCACAAATGCACCGTATCTTCTGAATGTTGATTGTGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTT
upper sequence: AT5G64740.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA08G15380.1 (Glycine max), 3'ss of exon 9
gtaaatgatatactttttaaagctctaaaccttcttctttgtaaattacgtcttgccatttattgaaatggttcctgactcttgatttcatctacaaaacttttgttgaagATACGAGTCTCTGGGGTTCTATCAAATGCTCCTTACCTTCTGAATGTCGATTGTGATCACTACATCAACAATAGCAAAGCTCTTAGAGAAGCAATGTGTT
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---------gtaagcatcaattcactttattattttggtt-caggtt-cagctgattttccattgacct--taaataacttgtttttgtaatgatattaaatatgt-gaagGTACGGGCTTCAGCAATTATCACTAATGCACCCTATCTTCTGAATGTTGATTGTGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTT
upper sequence: AT5G64740.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv07s0031g02060.t01 (Vitis vinifera), 3'ss of exon 9
-------------------------------------gtaaatgatatactttttaaagctctaaaccttcttctttgtaaattacgtcttgccatttattgaaa---tggttcctgactc-ttgatttcatctacaaaacttttg----ttgaagATACGAGTCTCTGGGGTTCTATCAAATGCTCCTTACCTTCTGAATGTCGATTGTGATCACTACATCAACAATAGCAAAGCTCTTAGAGAAGCAATGTGTT
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gtaaaccttaaatcaataacaccttcatagatcctttttctttggttgcctttccttgtcttctgtttttacttttagtataatacctggtttcgatgaataaacacttggcacagaatttattgagctttgttgctgtttttatgaatatccaagGTGCGAGTTTCAGCAGTCATTTCAAATGCCCCGTATCTTCTGAACGTTGACTGTGACCATTATATCAACAATAGCAAGGCACTTAGAGAAGCTATGTGTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124947690|gb|EL023511.1|EL023511EST: TAAGAAGGCTGGAGCTATGAATTCCCTG ATACGAGTCTCTGGGGTTCTATCAAATGCTCCTTACCTTCTGAATGTCGAT
genomic: TAAGAAGGCTGGAGCTATGAATTCCCTGgtaaatgata ... tttgttgaagATACGAGTCTCTGGGGTTCTATCAAATGCTCCTTACCTTCTGAATGTCGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catttattgaaatggttcctgactcttgatttcatctacaaaacttttgttgaagATACGAGTCTCTGGGGTTCTATCAAATGCTCCTTACCTTCTGAATGTCGATTGTGATCACTACATCAACAATAGCAAAGCTCTTAGAGAAGCAATGTGTT
cttttgtt CT-rich tract
aaaactttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaatgatatactttttaaagctctaaaccttcttctttgtaaattacgtcttgccatttattgaaatggttcctgactcttgatttcatctacaaaacttttgttgaagATACGAGTCTCTGGGGTTCTATCAAATGCTCCTTACCTTCTGAATGTCGATTGTGATCACTACATCAACAATAGCAAAGCTCTTAGAGAAGCAATGTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA