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gtaaccattttcccttgtcatgtattaaaaagcatctgtgttcttgtatgatttattgattacctgcaactgttttccttcttttctcagGGTATATTGCTTACAACTTTGTTTTAGGCGCCTATTCATATTGGGGACCAAAGGCTGGTTATAACATATACAAGATG
species | Arabidopsis thaliana |
transcript | AT5G64500.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGATTTGAAATTGCTTTTGGTAGATAAGGTTTATGTTACAAACATTCTTG GGTATATTGCTTACAACTTTGTTTTAGGCGCCTATTCATATTGGGGACCAAEST: gi|164045255|gb|EL996707.1|EL996707
genomic: AGATTTGAAATTGCTTTTGGTAGATAAGGTTTATGTTACAAACATTCTTGgtaaccattt ... cttttctcagGGTATATTGCTTACAACTTTGTTTTAGGCGCCTATTCATATTGGGGACCAA
EST: TAAGGTTTATGTTACAAACATTCTTG GGTATATTGCTTACAACTTTGTTTTAGGCGCCTATTCATATTGGGGACCAAEST: gi|116476815|gb|EG519407.1|EG519407
genomic: TAAGGTTTATGTTACAAACATTCTTGgtaaccattt ... cttttctcagGGTATATTGCTTACAACTTTGTTTTAGGCGCCTATTCATATTGGGGACCAA
EST: AGATTTGAAATTGCTTTTGGTAGATAAGGTTTATGTTACAAACATTCTTG GGTATATTGCTTACAACTTTGTTTTAGGCGCCTATTCATATTGGGGACCAA
genomic: AGATTTGAAATTGCTTTTGGTAGATAAGGTTTATGTTACAAACATTCTTGgtaaccattt ... cttttctcagGGTATATTGCTTACAACTTTGTTTTAGGCGCCTATTCATATTGGGGACCAA
ctgtgttcttgtatgatttattgattacctgcaactgttttccttcttttctcagGGTATATTGCTTACAACTTTGTTTTAGGCGCCTATTCATATTGGGGACCAAAGGCTGGTTATAACATATACAAGATG
tattgat putative branch site (score: 3)
caactgttttccttct putative PPT
tatgatttattgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaccattttcccttgtcatgtattaaaaagcatctgtgttcttgtatgatttattgattacctgcaactgttttccttcttttctcagGGTATATTGCTTACAACTTTGTTTTAGGCGCCTATTCATATTGGGGACCAAAGGCTGGTTATAACATATACAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG