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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagatatcgttcatcaattacttttgtcctaacttgtttggagtctctagactactctttaacctgctttttcccttactgcagAACAGCGAGGCAATGGTCTCAATCGATATGCCTGCTGGTCCTTCAGAAGTCCTAGTTATTGCTGACGAACATGCTAGTCCAGTTTACATTGCAGCAGACT

Basic information

species Arabidopsis thaliana
transcript AT5G63890.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63890.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G058584_T01 (Zea mays), 3'ss of exon 11
----------------gtatagatatcgttcatcaattacttttgtcctaacttgtttggagtctc-tagactactcttt--aacctgctttttcccttactgcagAACAGCGAGGCAATGGTCTCAATCGATATGCCTGCTGGTCCTTCAGAAGTCCTAGTTATTGCTGACGAACATGCTAGTCCAGTTTACATTGCAGCAGACT
                  || |  |   || | || |  ||| | | | ||    | |    | |  || | |  | ||      ||  |||||   |||||||||||||| || || ||||| || || || ||||||||||| ||||| |||||  |||| ||||||||  || | || |  |||||| |  |||| || ||  
gtttgttcttgttcttccattgtaaaactttaccattaccttctttgccaatacatcttttctatggtaaattgtttttgcggttctaatttttattttactgcagAACAGTGAAGCTATGGTATCTATAGACATGCCTGCTGGCCCTTCTGAAGTTTTAGTCATTGCTGATAAATACGCGAACCCAGTTCATGTTGCTGCTGATC

upper sequence: AT5G63890.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv18s0166g00300.t01 (Vitis vinifera), 3'ss of exon 11
--------------------gtatagatatcgttcatcaattacttt--tgtcc---taacttgtttggagtctctagactactct-ttaacctgctttttcccttact--gcagAACAGCGAGGCAATGGTCTCAATCGATATGCCTGCTGGTCCTTCAGAAGTCCTAGTTATTGCTGACGAACATGCTAGTCCAGTTTACATTGCAGCAGACT
                      |    ||| |    || | |  |||  ||||    | |      |    |||  | |  | ||| ||    | ||||||   ||  |   ||||| || || || ||||| ||||| ||||||||||| ||||| |||||||| ||||| ||||| ||| ||||||||| ||| ||| | ||||| ||||| |
gtaggcacacatttccttccaaaagattattggaactctacttttttgctgtctatatgatacacatcttatcttgatatgattctgttgcttttctttttttattcatcaacagAATAGTGAAGCTATGGTTTCAATTGATATGCCTGCGGGTCCATCAGAAGTTCTAGTCATTGCCGACAAACATGCTAATCCTGTTCATATTGCTGCAGATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacttgtttggagtctctagactactctttaacctgctttttcccttactgcagAACAGCGAGGCAATGGTCTCAATCGATATGCCTGCTGGTCCTTCAGAAGTCCTAGTTATTGCTGACGAACATGCTAGTCCAGTTTACATTGCAGCAGACT
                         ctctttaacctgcttt  CT-rich tract
                          tctttaa  TA-rich tract