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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatattctgtgacatatgttgattactttcttttgtgaatacgaagttaacttgtggtacaaattctgcagGTTTTATTGCCATGATTGCAACTTTAGCGAATCGTGATGTG

Basic information

species Arabidopsis thaliana
transcript AT5G61580.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125095301|gb|EL152494.1|EL152494
EST:     GAGCGTGGAAAATGGAGTTGGTATCGTTAAACTCATGGGCAGATACAGTG                         GTTTTTATTGCCATGATTGCAACTTTAGCGAATCGTGATGTGGATT
genomic: GAGCGTGGAAAATGGAGTTGGTATCGTTAAACTCATGGGCAGATACAGTGgtaaatattc ... aattctgcagGTTTT-ATTGCCATGATTGCAACTTTAGCGAATCGTGATGTGGATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgattactttcttttgtgaatacgaagttaacttgtggtacaaattctgcagGTTTTATTGCCATGATTGCAACTTTAGCGAATCGTGATGTG
                            agttaac  putative branch site (score: 3)
     attacttt  TA-rich tract