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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtagaataactaagatatatcatatacttgcaaacttctctcatgtattcacatcttataaagattggatcttttgttatgtataaagCCATGGTTGACACATTAGTTGCCAAGACCCGGGCTTGGGAAGAAGAACACAGCATGTCCTTTGCCTACGATGGTGTTCCTCTGCTAGCTATGCTAGACGA

Basic information

species Arabidopsis thaliana
transcript AT5G55230.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124805404|gb|EH892819.1|EH892819
EST:     GAATCTCAAGAGAGCTGAGAAAGCTCGGATTCTGGTTAGCAAGATTCCTG                         CCATGGTTGACACATTAGTTGCCAAGACCCGGGCTTGGGAAGA
genomic: GAATCTCAAGAGAGCTGAGAAAGCTCGGATTCTGGTTAGCAAGATTCCTGgtatgtgtag ... atgtataaagCCATGGTTGACACATTAGTTGCCAAGACCCGGGCTTGGGAAGA
EST: gi|47830653|gb|CK120337.1|CK120337
EST:     GAATCTCAAGAGAGCTGAGAAAGCTCGGATTCTGGTTAGCAAGATTCCTG                         CCATGGTTGACACATTAGTTGCCAAGACCCGGGCTTGGGAAGAAGAACACA
genomic: GAATCTCAAGAGAGCTGAGAAAGCTCGGATTCTGGTTAGCAAGATTCCTGgtatgtgtag ... atgtataaagCCATGGTTGACACATTAGTTGCCAAGACCCGGGCTTGGGAAGAAGAACACA
EST: gi|125245324|gb|EL259409.1|EL259409
EST:     TTAGCAAGATTCCTG                         CCATGGTTGACACATTAGTTGCCAAGACCCGGGCTTGGGAAGAAGAACACA
genomic: TTAGCAAGATTCCTGgtatgtgtag ... atgtataaagCCATGGTTGACACATTAGTTGCCAAGACCCGGGCTTGGGAAGAAGAACACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttctctcatgtattcacatcttataaagattggatcttttgttatgtataaagCCATGGTTGACACATTAGTTGCCAAGACCCGGGCTTGGGAAGAAGAACACAGCATGTCCTTTGCCTACGATGGTGTTCCTCTGCTAGCTATGCTAGACGA
                                      ttttgttatgtataaa  TA-rich tract