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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgattccattgctataacatcttttagatcgttttcttactcattctgtatcagaaaatttgatactgtattcatatgacttgcagGGTGAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCC

Basic information

species Arabidopsis thaliana
transcript AT5G54260.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G54260.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: LOC_Os04g54340.1 (Oryza sativa), 3'ss of exon 8
---------------------------------------------------gttgattccattgctataacatcttttagatcgttttcttactcattctgtatcagaaaatttgatactgtattcatatgacttgcagGGTGAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCC
                                                     || ||| ||     |      ||||  ||  | ||| | |   ||    |  ||||||||  |  ||| | |||||       |||| | ||| ||||||| ||||  ||||| | |||||| ||  | |||||||| || ||||| || || ||||||||||||||||||||||| || || |||
gtatgggcggtgaatgaatggtgacaaactgtagtggaatgtcagtatctgactggttcaatattcttgttcatttttttataatcttcatgccgcttactgaaaagaaaattgaaacctgaaatcata-------cagGATAAAAACAAACCCTAAAAGCGCAATCAATGAGCATTTCTTACCACGTTTTCTGGACTTTATAGTATGGGGCCATGAGCATGAATGCCTTATTGATCCC

upper sequence: AT5G54260.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: LOC_Os08g08030.1 (Oryza sativa), 3'ss of exon 7
--------gttgattccattgctataac-atcttttagatcgttttcttactcattctgtatcagaaaatttgatactgtattcatatgacttgcagGGTGAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCC
          ||  || ||   |||||  ||  |||      |||| | |||    ||   |   || | ||     ||| |   ||      |||||   ||   || | | | |||||  || | ||| ||  |  | ||| |||| || |||||  |  | |||||||||||||||||||||||||| || | |
gtatgcaaagtggctc-atgattataattattctttgttgtcttttttcacttgcgcttcctagcaacaatt-----tgtctctctaatttcggcagGAGAAAGGGAAGCTCAACAAATGGCATCAATGAACAGCTCTTGCCAAGTTTTCTTGACTTGGTAATATGGGGCCATGAGCATGAATGCCTAATTGATCAC

upper sequence: AT5G54260.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G106056_T03 (Zea mays), 3'ss of exon 8
--------------gttgattccattgctataacatcttttagatcgttttcttac--tcattctgtatcagaaaatttgatactgtattcatatgacttgcagGGTGAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCC
               |  |   ||  |  | |   | | ||  || |||||   ||  ||||| ||  | |  |||    |  ||  |     |   |||||||| | ||  ||||||| |||| ||| || | |||||| ||  | ||||||||||| || || ||||| |||||||||||||||||||| || || || || 
gtaggtgtagcaaattaaacaacaaagggaaacagtttgttcaattgtttttggaccttcattttggttaatgaaaagcaaatctacaactgaact-cttgcagGATAAAGACAAACCCTAAAAGTGCCATCAATGAGCATTTCTTACCACGTTTCCTGGATTTTATTGTATGGGGCCATGAGCATGAATGTCTTATTGATCCT

upper sequence: AT5G54260.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA14G12420.1 (Glycine max), 3'ss of exon 3
------gttgattccattgctataacatcttttagatcgttttcttactc---attctg-tatcagaaaatttgatactgtattcat--atgacttgcagGGTGAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCC
       ||||    |||| |   |||  |  |  |  ||        |    ||| |  | |||  |   ||| |  ||| ||||   |||   || ||||| |||  ||| || |||||||| |||| |||||||||  | ||| | ||||| ||||||||||||||||||||||||||||||||  |  | ||||| 
tttgactttgaaattattgatcctacaaatggtgtactgtacctcagttttagattttaatctcatgatgattggtcttgttttcaacaatggtatgtagGGTTAAAATAAATCCAAAAAATGCGATAAATGAGCACTTCTTGCCATGCTTCCTAGACTTCATTGTGTGGGGCCATGAGCATGAATGTTTGGTTGACCCG

upper sequence: AT5G54260.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv19s0014g03680.t01 (Vitis vinifera), 3'ss of exon 7
---gttgattccattgctat-aacatcttttag-atcgttttcttactcattct------gtatcagaaaatttgatactgtattcat-atgacttgcagGGTGAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCC
     |  |||  || |||| || || | || |  ||||||||   |  |          ||||  || |||   |       |   | |||   ||||| || ||  |||| || ||||||||||| |||||||| ||| | ||| | ||||| |||||||| |||||||| ||||| |||||||| ||  | || || 
tcttgtacttctttttctatcaatatatctttgtgtcgttttcaatcaaaaaaaaaaaaggtatgcgataatcaaacttaacttctttcatggtctgcagAGTAAAGACAAATCCTAAAAATGCAATCAGTGAGCATTTTTTACCAAGGTTCCTAGACTTCATAGTGTGGGGGCATGAACATGAATGTCTTGTTGATCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcttactcattctgtatcagaaaatttgatactgtattcatatgacttgcagGGTGAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCC
                       aaaatttgata  TA-rich tract