1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgagttgtttattggaattgcaaatgttgactctttaagtttatttgtttttgctttccaaaagagaacctcatatgcttaatggtggtgtgatatgcagGCTGCGAGTTTGAGAGTTGCGGAGCAATACATTCAAGCTTTTGGCAAAATTGCTAAGGAG
species | Arabidopsis thaliana |
transcript | AT5G54100.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGGGACTGGCCATGGTATCTCAATCCCTCAAGGAAGCTGGTGGAGAGGAG GCTGCGAGTTTGAGAGTTGCGGAGCAATACATTCAAGCTTTTGGCAAAATTEST: gi|124794173|gb|EH883852.1|EH883852
genomic: AGGGACTGGCCATGGTATCTCAATCCCTCAAGGAAGCTGGTGGAGAGGAGgtgatttcct ... tgatatgcagGCTGCGAGTTTGAGAGTTGCGGAGCAATACATTCAAGCTTTTGGCAAAATT
EST: AGGGACTGGCCATGGTATCTCAATCCCTCAAGGAAGCTGGTGGAGAGGAG GCTGCGAGTTTGAGAGTTGCGGAGCAATACATTCAAG
genomic: AGGGACTGGCCATGGTATCTCAATCCCTCAAGGAAGCTGGTGGAGAGGAGgtgatttcct ... tgatatgcagGCTGCGAGTTTGAGAGTTGCGGAGCAATACATTCAAG
tgtttttgctttccaaaagagaacctcatatgcttaatggtggtgtgatatgcagGCTGCGAGTTTGAGAGTTGCGGAGCAATACATTCAAGCTTTTGGCAAAATTGCTAAGGAG
gcttaat putative branch site (score: 4)
ttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagttgtttattggaattgcaaatgttgactctttaagtttatttgtttttgctttccaaaagagaacctcatatgcttaatggtggtgtgatatgcagGCTGCGAGTTTGAGAGTTGCGGAGCAATACATTCAAGCTTTTGGCAAAATTGCTAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - -gcaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacctca