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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgactcaaataaattcacccccttgtatctgtttctgaatggtttgagggatttaaatatttgattttctacatctgattcagGATGCGGTAGCCCTTGCTCAGAGCGAGGAAGAGCCCGAAGCAGCTGCCCGCAAGTTAACTGACACTGCCTTCAGCCGTGGCAGTGCAGACAACATCACGT

Basic information

species Arabidopsis thaliana
transcript AT5G53140.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116439162|gb|EG481754.1|EG481754
EST:     AGTTGCTTGTGCTTGCAAGTGACGGTTTATGGGATGTGGTACCAAATGAG                         GATGCGGTAGCCCTTGCTCAGAGCGAGGAAGAGCCCGAAGCAGCTGCCCGC
genomic: AGTTGCTTGTGCTTGCAAGTGACGGTTTATGGGATGTGGTACCAAATGAGgtatgactca ... tctgattcagGATGCGGTAGCCCTTGCTCAGAGCGAGGAAGAGCCCGAAGCAGCTGCCCGC
EST: gi|124713852|gb|EH805254.1|EH805254
EST:     AGTTGCTTGTGCTTGCAAGTGACGGTTTATGGGATGTGGTACCAAATGAG                         GATGCGGTAGCCCTTGCTCAGAGCGAGGAAGAGCCCGAAG
genomic: AGTTGCTTGTGCTTGCAAGTGACGGTTTATGGGATGTGGTACCAAATGAGgtatgactca ... tctgattcagGATGCGGTAGCCCTTGCTCAGAGCGAGGAAGAGCCCGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtttctgaatggtttgagggatttaaatatttgattttctacatctgattcagGATGCGGTAGCCCTTGCTCAGAGCGAGGAAGAGCCCGAAGCAGCTGCCCGCAAGTTAACTGACACTGCCTTCAGCCGTGGCAGTGCAGACAACATCACGT
                                            atctgat  putative branch site (score: 4)
                      atttaaatatttgatt  TA-rich tract