1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gttagcctctaaataactttcatcatcatcaatgtccaaatttagtcttagcgtcttccactgggttctaaatcaaacaagatgcttctgaatggttgatgtatatgaaataagttgttgagttattacgcctttgtagGCTGCACACGATGCTTGTGTTGAAACAAGTGGATCTCTTAACACAATCGCCACATCATTGATGAAGATTGCCAATGATATACGTTTTCTTGGAAG
species | Arabidopsis thaliana |
transcript | AT5G50950.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGAAACAAACTTGCCATTCGTCACCGCAGAAAACAAGTTTGAAGCTCTG GCTGCACACGATGCTTGTGTTGAAACAAGTGGATCTCTTAACACAATCGCCEST: gi|125190093|gb|EL205047.1|EL205047
genomic: AAGAAACAAACTTGCCATTCGTCACCGCAGAAAACAAGTTTGAAGCTCTGgttagcctct ... gcctttgtagGCTGCACACGATGCTTGTGTTGAAACAAGTGGATCTCTTAACACAATCGCC
EST: AAGAAACAAACTTGCCATTCGTCACCGCAGAAAACAAGTTTGAAGCTCTG GCTGCACACGATGCTTGTGTTGAAACAAGTGGAEST: gi|116467405|gb|EG509997.1|EG509997
genomic: AAGAAACAAACTTGCCATTCGTCACCGCAGAAAACAAGTTTGAAGCTCTGgttagcctct ... gcctttgtagGCTGCACACGATGCTTGTGTTGAAACAAGTGGA
EST: AAGAAACAAACTTGCCATTCGTCACCGCAGAAAACAAGTTTGAAGCTCTG GCTGCACACGATGCTTGTGTTGAAACAAGTGGATCTCTTAACACAATCGCCEST: gi|116456305|gb|EG498897.1|EG498897
genomic: AAGAAACAAACTTGCCATTCGTCACCGCAGAAAACAAGTTTGAAGCTCTGgttagcctct ... gcctttgtagGCTGCACACGATGCTTGTGTTGAAACAAGTGGATCTCTTAACACAATCGCC
EST: AAGAAACAAACTTGCCATTCGTCACCGCAGAAAACAAGTTTGAAGCTCTG GCTGCACACGATGCTTGTGTTGAAACAAGTGGATCTCTTAACACAATCGCCEST: gi|124857416|gb|EH941853.1|EH941853
genomic: AAGAAACAAACTTGCCATTCGTCACCGCAGAAAACAAGTTTGAAGCTCTGgttagcctct ... gcctttgtagGCTGCACACGATGCTTGTGTTGAAACAAGTGGATCTCTTAACACAATCGCC
EST: AAGAAACAAACTTGCCATTCGTCACCGCAGAAAACAAGTTTGAAGCTCTG GCTGCACACGATGCTTGTGTTGAAAEST: gi|116428316|gb|EG470908.1|EG470908
genomic: AAGAAACAAACTTGCCATTCGTCACCGCAGAAAACAAGTTTGAAGCTCTGgttagcctct ... gcctttgtagGCTGCACACGATGCTTGTGTTGAAA
EST: AAGAAACAAACTTGCCATTCGTCACCGCAGAAAACAAGTTTGAAGCTCTG GCTGCACACGATGCTTGTGTTGAAACAAGTGGATCTCTTAACACAATCGCC
genomic: AAGAAACAAACTTGCCATTCGTCACCGCAGAAAACAAGTTTGAAGCTCTGgttagcctct ... gcctttgtagGCTGCACACGATGCTTGTGTTGAAACAAGTGGATCTCTTAACACAATCGCC
cttctgaatggttgatgtatatgaaataagttgttgagttattacgcctttgtagGCTGCACACGATGCTTGTGTTGAAACAAGTGGATCTCTTAACACAATCGCCACATCATTGATGAAGATTGCCAATGATATACGTTTTCTTGGAAG
ggttgat putative branch site (score: 5)
cgccttt putative PPT
atgtatatgaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcctctaaataactttcatcatcatcaatgtccaaatttagtcttagcgtcttccactgggttctaaatcaaacaagatgcttctgaatggttgatgtatatgaaataagttgttgagttattacgcctttgtagGCTGCACACGATGCTTGTGTTGAAACAAGTGGATCTCTTAACACAATCGCCACATCATTGATGAAGATTGCCAATGATATACGTTTTCTTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG