Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcattcttcgatctaacttctactttgaaaagttttcctaaactattctttgtttaacaatgtgtcaatgttgtcttagGGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGTGCTCTGGATGAAAAAAAGCCAGCTTCTGCTTCCAGTACACAGATGGAAG

Basic information

species Arabidopsis thaliana
transcript AT5G49390.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116464480|gb|EG507072.1|EG507072
EST:     CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAG                         GGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
genomic: CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAGgtatcattct ... gttgtcttagGGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
EST: gi|116464443|gb|EG507035.1|EG507035
EST:     CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAG                         GGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
genomic: CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAGgtatcattct ... gttgtcttagGGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
EST: gi|116464458|gb|EG507050.1|EG507050
EST:     CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAG                         GGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
genomic: CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAGgtatcattct ... gttgtcttagGGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
EST: gi|116464454|gb|EG507046.1|EG507046
EST:     CATTTGAGAACCTGCGTTCCATCGAGGATTTGAAAACGAAATATGAGAAG                         GGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
genomic: CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAGgtatcattct ... gttgtcttagGGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
EST: gi|116464465|gb|EG507057.1|EG507057
EST:     CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAG                         GGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
genomic: CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAGgtatcattct ... gttgtcttagGGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
EST: gi|116464476|gb|EG507068.1|EG507068
EST:     CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAG                         GGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
genomic: CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAGgtatcattct ... gttgtcttagGGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
EST: gi|116464489|gb|EG507081.1|EG507081
EST:     CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAG                         GGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
genomic: CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAGgtatcattct ... gttgtcttagGGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
EST: gi|116464469|gb|EG507061.1|EG507061
EST:     CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAG                         GGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGACGT
genomic: CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAGgtatcattct ... gttgtcttagGGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
EST: gi|116464493|gb|EG507085.1|EG507085
EST:     CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAG                         GGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGACGT
genomic: CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAGgtatcattct ... gttgtcttagGGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
EST: gi|116464487|gb|EG507079.1|EG507079
EST:     CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAG                         GGACCAAAGAGCACC
genomic: CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAGgtatcattct ... gttgtcttagGGACCAAAGAGCACC
EST: gi|116464420|gb|EG507012.1|EG507012
EST:     CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAG                         GGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
genomic: CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAGgtatcattct ... gttgtcttagGGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
EST: gi|116464409|gb|EG507001.1|EG507001
EST:     CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAG                         GGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
genomic: CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAGgtatcattct ... gttgtcttagGGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
EST: gi|116464446|gb|EG507038.1|EG507038
EST:     CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAG                         GGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT
genomic: CATTTGAGAACCTGCGTTCCATCAAGGATTTGAAAACGAAATATGAGAAGgtatcattct ... gttgtcttagGGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaaaagttttcctaaactattctttgtttaacaatgtgtcaatgttgtcttagGGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGTGCTCTGGATGAAAAAAAGCCAGCTTCTGCTTCCAGTACACAGATGGAAG
                                              ttgtctt  CT-rich tract
                   tattctttgtttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatcattcttcgatctaacttctactttgaaaagttttcctaaactattctttgtttaacaatgtgtcaatgttgtcttagGGACCAAAGAGCACCACTGATGATGAATCTGATATGAGACAAGATGGGCGTGCTCTGGATGAAAAAAAGCCAGCTTCTGCTTCCAGTACACAGATGGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG