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gtccttttcctagctgaccatatatatgttcttagcttttagagaactcatgtaacgtatgaagtggatcttggttagatttgcaacttttttttctctttagtaaattttgtctctctttgacagTGATGGTGCAGCTGCCCTTGTCCTAGTGAGCGGAGAGAAGGCTCTTCAGCTAGGACTTCTAGTATTAGCAAAAATTAAAGGGTATGGTGACGCAGCTCAG
species | Arabidopsis thaliana |
transcript | AT5G48230.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTCAAAGAGAATGGAGGGACTGTTACAGCTGGAAATGCGTCTAGCATAAG TGATGGTGCAGCTGCCCTTGTCCTAGTGAGCGGAGEST: gi|164163306|gb|ES027734.1|ES027734
genomic: TTCAAAGAGAATGGAGGGACTGTTACAGCTGGAAATGCGTCTAGCATAAGgtccttttcc ... tctttgacagTGATGGTGCAGCTGCCCTTGTCCTAGTGAGCGGAG
EST: TTCAAAGAGAATGGAGGGACTGTTACAGCTGGAAATGCGTCTAGCATAAG TGATGGTGCAGCTGCCCTTGTCC
genomic: TTCAAAGAGAATGGAGGGACTGTTACAGCTGGAAATGCGTCTAGCATAAGgtccttttcc ... tctttgacagTGATGGTGCAGCTGCCCTTGTCC
tggttagatttgcaacttttttttctctttagtaaattttgtctctctttgacagTGATGGTGCAGCTGCCCTTGTCCTAGTGAGCGGAGAGAAGGCTCTTCAGCTAGGACTTCTAGTATTAGCAAAAATTAAAGGGTATGGTGACGCAGCTCAG
ttttgtctctcttt CT-rich tract
aacttttttttctctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccttttcctagctgaccatatatatgttcttagcttttagagaactcatgtaacgtatgaagtggatcttggttagatttgcaacttttttttctctttagtaaattttgtctctctttgacagTGATGGTGCAGCTGCCCTTGTCCTAGTGAGCGGAGAGAAGGCTCTTCAGCTAGGACTTCTAGTATTAGCAAAAATTAAAGGGTATGGTGACGCAGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA