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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctagattttaacccaagtcctgtttttctcaatctttgttttatgtccatttcatttgatctcttatatattctcagCAATGCAGTATAAATTATCCAAACAATGGGCCATTACCTCCAGACGCTCCTTCTTGGTGTCAAGCGCCTTTTGACCCCGAAGGCCTCTTAAG

Basic information

species Arabidopsis thaliana
transcript AT5G47900.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116435426|gb|EG478018.1|EG478018
EST:     TTCTAGGAATCCAACATTTGTGCGGAAAACCTGTATATGCACGAACCAAG                         CAATGCAGTATAAATTATCCAAACAA
genomic: TTCTAGGAATCCAGCATTTGTACAGAAAACCTGTATATGCACGAACCAAGgttctagatt ... atattctcagCAATGCAGTATAAATTATCCAAACAA
EST: gi|116435479|gb|EG478071.1|EG478071
EST:     TTCTAGGAATCCAGCATTTGTACAGAAAACCTGTATATGCACGAACCAAG                         CAATGCAGTATAAATTATCCAAACAATGGGCCA
genomic: TTCTAGGAATCCAGCATTTGTACAGAAAACCTGTATATGCACGAACCAAGgttctagatt ... atattctcagCAATGCAGTATAAATTATCCAAACAATGGGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttctcaatctttgttttatgtccatttcatttgatctcttatatattctcagCAATGCAGTATAAATTATCCAAACAATGGGCCATTACCTCCAGACGCTCCTTCTTGGTGTCAAGCGCCTTTTGACCCCGAAGGCCTCTTAAG
                               atttgat  putative branch site (score: 5)
                                              tattctc  putative PPT
        aatctttgttttat  TA-rich tract