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gtagattgctgttaagtattcatgagagctatatgataggtagtgttgggatgttgataaccattcttttgtgtagGATGATTATCTGGATTGTTTTGCTGATCCCGAGACGCTTGGCAAG
species | Arabidopsis thaliana |
transcript | AT5G47770.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTGTTGACATGGGAATCTACTTCCAAGTGCAG GATGATTATCTGGATTGTTTTGCTGATCCCGAGACGCTTGGCAAGEST: gi|124725940|gb|EH817342.1|EH817342
genomic: CTTGTTGACATGGGAATCTACTTCCAAGTGCAGgtagattgct ... ttttgtgtagGATGATTATCTGGATTGTTTTGCTGATCCCGAGACGCTTGGCAAG
EST: TTGATGTAAAGAATGTTCTTGTTGACATGGGAATCTACTTCCAAGTGCAG GATGATTATCTGGATTGTTTTGCTGATCCCGAGACGCTEST: gi|124728442|gb|EH819844.1|EH819844
genomic: TTGATGTGAAGAATGTTCTTGTTGACATGGGAATCTACTTCCAAGTGCAGgtagattgct ... ttttgtgtagGATGATTATCTGGATTGTTTTGCTGATCCCGAGACGCT
EST: TTGATGTGAAGAATGTTCTTGTTGACATGGGAATCTACTTCCAAGTGCAG GATGATTATCTGGATTGTTTTGCTGATCCCGAGACGCTTGGCAEST: gi|125184675|gb|EL199629.1|EL199629
genomic: TTGATGTGAAGAATGTTCTTGTTGACATGGGAATCTACTTCCAAGTGCAGgtagattgct ... ttttgtgtagGATGATTATCTGGATTGTTTTGCTGATCCCGAGACGCTTGGCA
EST: AATGTTCTTGTTGACATGGGAATCTACTTCCAAGTGCAG GATGATTATCTGGATTGTTTTGCTGATCCCG
genomic: AATGTTCTTGTTGACATGGGAATCTACTTCCAAGTGCAGgtagattgct ... ttttgtgtagGATGATTATCTGGATTGTTTTGCTGATCCCG
atgagagctatatgataggtagtgttgggatgttgataaccattcttttgtgtagGATGATTATCTGGATTGTTTTGCTGATCCCGAGACGCTTGGCAAG
tgataac putative branch site (score: 2)
ccattctttt CT-rich tract
tatatgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagattgctgttaagtattcatgagagctatatgataggtagtgttgggatgttgataaccattcttttgtgtagGATGATTATCTGGATTGTTTTGCTGATCCCGAGACGCTTGGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT