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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaacacttcctatacgtttacataatttattttgtgaggatgattagtacttgactcaataattaaaaacgtttgacagGGTTACTCAGACCCTTTGTGAGAGCAAAACATGCCCAATAGATTTAATCAGTCCGCCGGATGATTGCCATGTCAATTATACACTATCCTTTTCCCTTCAG

Basic information

species Arabidopsis thaliana
transcript AT5G47020.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G47020.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA11G04290.1 (Glycine max), 3'ss of exon 7
----------------gtgagtaacacttcctat---------acgtttacataatttattttgtgaggatga--ttagt--acttgactcaataattaaaaacgtttgacagGGTTACTCAGACCCTTTGTGAGAGCAAAACATGCCCAATAGATTTAATCAGTCCGCCGGATGATTGCCATGTCAATTATACACTATCCTTTTCCCTTCAG
                   ||| ||| | | |           |  |  | ||    ||||| |  |   | |  ||| |  | || | |   |  || || |  |||   ||||| ||  |    ||||| || |   | | ||||||||||||||| || | ||| || || ||||| |||||||| |||||||| ||||| || ||||| 
gtaagtatgactgctttctagtcacattgcttgacttaaaacaatttccatatggcctatttggaaactctaaacttaatccattttattgttttttttaataatttttgtagGGTGACAAAACATCTTTGCGACACACAGAGATGCCCAATAGATTTGATAACTCCACCTGACGATTGTCATGTCAACTATACACTCTCCTTCTCACTTCAA

upper sequence: AT5G47020.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA01G41140.1 (Glycine max), 3'ss of exon 7
----------------gtgagtaacacttcctatacgtttaca----taatttattttgtgaggatgattagtacttgactcaataatt------------aaaaacgtttgacagGGTTACTCAGACCCTTTGTGAGAGCAAAACATGCCCAATAGATTTAATCAGTCCGCCGGATGATTGCCATGTCAATTATACACTATCCTTTTCCCTTCAG
                   ||| ||| | | |  || |  |||      || |    |||  |||   |    |||| |  || |  ||            || || |||||  ||||| ||  |    ||||| || |   | | ||| ||||||||||| || | ||| || |||||||| |||||||| |||||||| ||||| || ||||| 
gtaagtacgactgctttccagtcacattgcttg-acttaaacaatttccatctggcctgtttggaaactctaaacttaatccatttttttttgttttttttaataatgtttg-tagGGTGACAAAACATCTTTGCGACACACAGAGATGTCCAATAGATTTGATAACTCCACCTGATGATTGTCATGTCAACTATACACTCTCCTTCTCACTTCAA

upper sequence: AT5G47020.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv02s0012g00460.t01 (Vitis vinifera), 3'ss of exon 7
gtgagtaacacttccta-tacgtttacata-atttattttgtgaggatgatta---gtacttgactcaataattaaaaacg------tttgac-----------agGGTTACTCAGACCCTTTGTGAGAGCAAAACATGCCCAATAGATTTAATCAGTCCGCCGGATGATTGCCATGTCAATTATACACTATCCTTTTCCCTTCAG
||||||   |  ||||  | | ||| | |  |  |  |  | |   |  || |     | || | ||| |  |  ||  |       |||| |           ||||| ||  |  ||| |||||||||  | ||||||||||| ||||| || |  || || |||||||||||||| ||| |||||||||||||||| ||||| 
gtgagtgtgaaatcctgcttcattttcttggaactgctaagagtacacaatcatccacaattaaatcatttctgtaattctctctcctttgtctctccatctgtagGGTAACAAAATCCCGTTGTGAGAGTCAGACATGCCCAATGGATTTGATTACCCCACCAGATGATTGCCATGTTAATAATACACTATCCTTTTCACTTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttattttgtgaggatgattagtacttgactcaataattaaaaacgtttgacagGGTTACTCAGACCCTTTGTGAGAGCAAAACATGCCCAATAGATTTAATCAGTCCGCCGGATGATTGCCATGTCAATTATACACTATCCTTTTCCCTTCAG
                        acttgac  putative branch site (score: 4)
                                 aataattaaaaacgtt  TA-rich tract